| Motif | ZXDA.H14INVITRO.0.PSI.A |
| Gene (human) | ZXDA (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | ZXDA.H14INVITRO.0.PSI.A |
| Gene (human) | ZXDA (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 8 |
| Consensus | nhAGGGKn |
| GC content | 68.63% |
| Information content (bits; total / per base) | 8.14 / 1.018 |
| Data sources | ChIP-Seq + HT-SELEX + SMiLe-Seq |
| Aligned words | 1303 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 3 (5) | 0.784 | 0.817 | 0.641 | 0.687 | 0.616 | 0.662 | 20.921 | 52.137 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| IVT, 1 experiments | median | 0.613 | 0.588 | 0.563 | 0.553 | 0.527 | 0.531 |
| best | 0.613 | 0.588 | 0.563 | 0.553 | 0.527 | 0.531 | |
| SMiLE-Seq benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 1 experiments | median | 0.736 | 0.71 | 0.656 | 0.635 | 0.59 | 0.587 |
| best | 0.736 | 0.71 | 0.656 | 0.635 | 0.59 | 0.587 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | ZXD {2.3.3.46} (TFClass) |
| TFClass ID | TFClass: 2.3.3.46.1 |
| HGNC | HGNC:13198 |
| MGI | |
| EntrezGene (human) | GeneID:7789 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | ZXDA_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | P98168 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | no |
| ChIP-Seq | 3 human, 0 mouse |
| HT-SELEX | 1 overall: 0 Lysate, 1 IVT, 0 GFPIVT |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 1 |
| PBM | 0 |
| PCM | ZXDA.H14INVITRO.0.PSI.A.pcm |
| PWM | ZXDA.H14INVITRO.0.PSI.A.pwm |
| PFM | ZXDA.H14INVITRO.0.PSI.A.pfm |
| Threshold to P-value map | ZXDA.H14INVITRO.0.PSI.A.thr |
| Motif in other formats | |
| JASPAR format | ZXDA.H14INVITRO.0.PSI.A_jaspar_format.txt |
| MEME format | ZXDA.H14INVITRO.0.PSI.A_meme_format.meme |
| Transfac format | ZXDA.H14INVITRO.0.PSI.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 309.25 | 269.25 | 389.25 | 335.25 |
| 02 | 182.0 | 775.0 | 114.0 | 232.0 |
| 03 | 1303.0 | 0.0 | 0.0 | 0.0 |
| 04 | 0.0 | 330.0 | 973.0 | 0.0 |
| 05 | 0.0 | 0.0 | 1303.0 | 0.0 |
| 06 | 104.0 | 0.0 | 1199.0 | 0.0 |
| 07 | 52.5 | 62.5 | 989.5 | 198.5 |
| 08 | 193.5 | 419.5 | 330.5 | 359.5 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.237 | 0.207 | 0.299 | 0.257 |
| 02 | 0.14 | 0.595 | 0.087 | 0.178 |
| 03 | 1.0 | 0.0 | 0.0 | 0.0 |
| 04 | 0.0 | 0.253 | 0.747 | 0.0 |
| 05 | 0.0 | 0.0 | 1.0 | 0.0 |
| 06 | 0.08 | 0.0 | 0.92 | 0.0 |
| 07 | 0.04 | 0.048 | 0.759 | 0.152 |
| 08 | 0.149 | 0.322 | 0.254 | 0.276 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.052 | -0.189 | 0.177 | 0.029 |
| 02 | -0.578 | 0.864 | -1.04 | -0.337 |
| 03 | 1.382 | -5.208 | -5.208 | -5.208 |
| 04 | -5.208 | 0.013 | 1.091 | -5.208 |
| 05 | -5.208 | -5.208 | 1.382 | -5.208 |
| 06 | -1.13 | -5.208 | 1.299 | -5.208 |
| 07 | -1.797 | -1.628 | 1.107 | -0.492 |
| 08 | -0.517 | 0.252 | 0.014 | 0.098 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.50034 |
| 0.0005 | 6.00191 |
| 0.0001 | 7.18381 |