| Motif | ZSCA2.H14RSNP.0.PG.D |
| Gene (human) | ZSCAN2 (GeneCards) |
| Gene synonyms (human) | ZFP29, ZNF854 |
| Gene (mouse) | Zscan2 |
| Gene synonyms (mouse) | Zfp-29, Zfp29 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | ZSCA2.H14RSNP.0.PG.D |
| Gene (human) | ZSCAN2 (GeneCards) |
| Gene synonyms (human) | ZFP29, ZNF854 |
| Gene (mouse) | Zscan2 |
| Gene synonyms (mouse) | Zfp-29, Zfp29 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 25 |
| Consensus | hGGKTAGAChhhRGGWRGGACTTCC |
| GC content | 48.07% |
| Information content (bits; total / per base) | 32.403 / 1.296 |
| Data sources | ChIP-Seq + Genomic HT-SELEX |
| Aligned words | 9345 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 3 (3) | 0.768 | 0.864 | 0.715 | 0.857 | 0.644 | 0.858 | 20.699 | 89.921 |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| Lysate, 2 experiments | median | 108.806 | 0.774 | 0.788 | 0.805 |
| best | 162.143 | 0.919 | 0.931 | 0.913 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | ZNF180-like {2.3.3.58} (TFClass) |
| TFClass ID | TFClass: 2.3.3.58.6 |
| HGNC | HGNC:20994 |
| MGI | MGI:99176 |
| EntrezGene (human) | GeneID:54993 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:22691 (SSTAR profile) |
| UniProt ID (human) | ZSCA2_HUMAN |
| UniProt ID (mouse) | ZSCA2_MOUSE |
| UniProt AC (human) | Q7Z7L9 (TFClass) |
| UniProt AC (mouse) | Q07230 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 3 human, 0 mouse |
| HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| Genomic HT-SELEX | 2 overall: 2 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | ZSCA2.H14RSNP.0.PG.D.pcm |
| PWM | ZSCA2.H14RSNP.0.PG.D.pwm |
| PFM | ZSCA2.H14RSNP.0.PG.D.pfm |
| Threshold to P-value map | ZSCA2.H14RSNP.0.PG.D.thr |
| Motif in other formats | |
| JASPAR format | ZSCA2.H14RSNP.0.PG.D_jaspar_format.txt |
| MEME format | ZSCA2.H14RSNP.0.PG.D_meme_format.meme |
| Transfac format | ZSCA2.H14RSNP.0.PG.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 5345.0 | 1591.0 | 608.0 | 1801.0 |
| 02 | 3262.75 | 11.75 | 6029.75 | 40.75 |
| 03 | 111.0 | 4.0 | 9175.0 | 55.0 |
| 04 | 346.0 | 1082.0 | 1695.0 | 6222.0 |
| 05 | 17.0 | 398.0 | 83.0 | 8847.0 |
| 06 | 9200.0 | 21.0 | 110.0 | 14.0 |
| 07 | 23.0 | 33.0 | 9271.0 | 18.0 |
| 08 | 9202.0 | 97.0 | 39.0 | 7.0 |
| 09 | 25.0 | 8329.0 | 4.0 | 987.0 |
| 10 | 3267.0 | 1708.0 | 190.0 | 4180.0 |
| 11 | 1422.0 | 1485.0 | 1290.0 | 5148.0 |
| 12 | 3137.0 | 3788.0 | 1056.0 | 1364.0 |
| 13 | 7434.0 | 606.0 | 658.0 | 647.0 |
| 14 | 2510.0 | 40.0 | 6674.0 | 121.0 |
| 15 | 698.0 | 315.0 | 8317.0 | 15.0 |
| 16 | 6813.0 | 974.0 | 341.0 | 1217.0 |
| 17 | 6721.0 | 38.0 | 2317.0 | 269.0 |
| 18 | 5.0 | 3.0 | 9304.0 | 33.0 |
| 19 | 2451.0 | 100.0 | 6780.0 | 14.0 |
| 20 | 9190.0 | 148.0 | 2.0 | 5.0 |
| 21 | 14.0 | 9245.0 | 4.0 | 82.0 |
| 22 | 102.0 | 188.0 | 14.0 | 9041.0 |
| 23 | 121.0 | 83.0 | 57.0 | 9084.0 |
| 24 | 320.0 | 8770.0 | 40.0 | 215.0 |
| 25 | 101.5 | 9144.5 | 51.5 | 47.5 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.572 | 0.17 | 0.065 | 0.193 |
| 02 | 0.349 | 0.001 | 0.645 | 0.004 |
| 03 | 0.012 | 0.0 | 0.982 | 0.006 |
| 04 | 0.037 | 0.116 | 0.181 | 0.666 |
| 05 | 0.002 | 0.043 | 0.009 | 0.947 |
| 06 | 0.984 | 0.002 | 0.012 | 0.001 |
| 07 | 0.002 | 0.004 | 0.992 | 0.002 |
| 08 | 0.985 | 0.01 | 0.004 | 0.001 |
| 09 | 0.003 | 0.891 | 0.0 | 0.106 |
| 10 | 0.35 | 0.183 | 0.02 | 0.447 |
| 11 | 0.152 | 0.159 | 0.138 | 0.551 |
| 12 | 0.336 | 0.405 | 0.113 | 0.146 |
| 13 | 0.796 | 0.065 | 0.07 | 0.069 |
| 14 | 0.269 | 0.004 | 0.714 | 0.013 |
| 15 | 0.075 | 0.034 | 0.89 | 0.002 |
| 16 | 0.729 | 0.104 | 0.036 | 0.13 |
| 17 | 0.719 | 0.004 | 0.248 | 0.029 |
| 18 | 0.001 | 0.0 | 0.996 | 0.004 |
| 19 | 0.262 | 0.011 | 0.726 | 0.001 |
| 20 | 0.983 | 0.016 | 0.0 | 0.001 |
| 21 | 0.001 | 0.989 | 0.0 | 0.009 |
| 22 | 0.011 | 0.02 | 0.001 | 0.967 |
| 23 | 0.013 | 0.009 | 0.006 | 0.972 |
| 24 | 0.034 | 0.938 | 0.004 | 0.023 |
| 25 | 0.011 | 0.979 | 0.006 | 0.005 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.827 | -0.384 | -1.343 | -0.26 |
| 02 | 0.334 | -5.116 | 0.948 | -3.995 |
| 03 | -3.027 | -5.919 | 1.367 | -3.709 |
| 04 | -1.904 | -0.769 | -0.32 | 0.979 |
| 05 | -4.798 | -1.765 | -3.311 | 1.331 |
| 06 | 1.37 | -4.609 | -3.036 | -4.967 |
| 07 | -4.527 | -4.194 | 1.378 | -4.747 |
| 08 | 1.37 | -3.159 | -4.037 | -5.529 |
| 09 | -4.451 | 1.27 | -5.919 | -0.86 |
| 10 | 0.335 | -0.313 | -2.498 | 0.581 |
| 11 | -0.496 | -0.453 | -0.593 | 0.79 |
| 12 | 0.294 | 0.483 | -0.793 | -0.537 |
| 13 | 1.157 | -1.347 | -1.265 | -1.281 |
| 14 | 0.072 | -4.013 | 1.049 | -2.943 |
| 15 | -1.206 | -1.997 | 1.269 | -4.907 |
| 16 | 1.07 | -0.874 | -1.919 | -0.651 |
| 17 | 1.056 | -4.061 | -0.008 | -2.154 |
| 18 | -5.771 | -6.092 | 1.381 | -4.194 |
| 19 | 0.048 | -3.13 | 1.065 | -4.967 |
| 20 | 1.369 | -2.745 | -6.302 | -5.771 |
| 21 | -4.967 | 1.375 | -5.919 | -3.323 |
| 22 | -3.11 | -2.509 | -4.967 | 1.352 |
| 23 | -2.943 | -3.311 | -3.675 | 1.357 |
| 24 | -1.982 | 1.322 | -4.013 | -2.376 |
| 25 | -3.115 | 1.364 | -3.772 | -3.85 |
| P-value | Threshold |
|---|---|
| 0.001 | -11.58059 |
| 0.0005 | -9.38124 |
| 0.0001 | -4.67924 |