ZSCA2.H14INVIVO.0.PG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZSCA2.H14INVIVO.0.PG.A
Gene (human)	ZSCAN2 (GeneCards)
Gene synonyms (human)	ZFP29, ZNF854
Gene (mouse)	Zscan2
Gene synonyms (mouse)	Zfp-29, Zfp29
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	21
Consensus	RGbbRGAYhnnvRGvRGRACY
GC content	51.77%
Information content (bits; total / per base)	16.091 / 0.766
Data sources	ChIP-Seq + Genomic HT-SELEX
Aligned words	500
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	3 (3)	0.77	0.871	0.714	0.857	0.707	0.9	23.886	104.854

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
Lysate, 2 experiments	median	112.063	0.782	0.774	0.793
Lysate, 2 experiments	best	176.959	0.932	0.92	0.902

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF180-like {2.3.3.58} (TFClass)
TFClass ID	TFClass: 2.3.3.58.6
HGNC	HGNC:20994
MGI	MGI:99176
EntrezGene (human)	GeneID:54993 (SSTAR profile)
EntrezGene (mouse)	GeneID:22691 (SSTAR profile)
UniProt ID (human)	ZSCA2_HUMAN
UniProt ID (mouse)	ZSCA2_MOUSE
UniProt AC (human)	Q7Z7L9 (TFClass)
UniProt AC (mouse)	Q07230 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 0 mouse
HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	2 overall: 2 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZSCA2.H14INVIVO.0.PG.A.pcm
PWM	ZSCA2.H14INVIVO.0.PG.A.pwm
PFM	ZSCA2.H14INVIVO.0.PG.A.pfm
Threshold to P-value map	ZSCA2.H14INVIVO.0.PG.A.thr
Motif in other formats
JASPAR format	ZSCA2.H14INVIVO.0.PG.A_jaspar_format.txt
MEME format	ZSCA2.H14INVIVO.0.PG.A_meme_format.meme
Transfac format	ZSCA2.H14INVIVO.0.PG.A_transfac_format.txt
Homer format	ZSCA2.H14INVIVO.0.PG.A_homer_format_0.001.txt ZSCA2.H14INVIVO.0.PG.A_homer_format_0.0005.txt ZSCA2.H14INVIVO.0.PG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	193.0	3.0	291.0	13.0
02	23.0	9.0	454.0	14.0
03	60.0	97.0	104.0	239.0
04	40.0	131.0	78.0	251.0
05	382.0	6.0	75.0	37.0
06	9.0	4.0	472.0	15.0
07	438.0	33.0	21.0	8.0
08	17.0	302.0	47.0	134.0
09	205.0	104.0	57.0	134.0
10	118.0	113.0	117.0	152.0
11	115.0	183.0	133.0	69.0
12	284.0	82.0	78.0	56.0
13	159.0	13.0	305.0	23.0
14	65.0	23.0	402.0	10.0
15	289.0	92.0	69.0	50.0
16	323.0	3.0	141.0	33.0
17	12.0	2.0	480.0	6.0
18	179.0	40.0	278.0	3.0
19	436.0	39.0	20.0	5.0
20	15.0	420.0	19.0	46.0
21	43.0	56.0	40.0	361.0

PFM

	A	C	G	T
01	0.386	0.006	0.582	0.026
02	0.046	0.018	0.908	0.028
03	0.12	0.194	0.208	0.478
04	0.08	0.262	0.156	0.502
05	0.764	0.012	0.15	0.074
06	0.018	0.008	0.944	0.03
07	0.876	0.066	0.042	0.016
08	0.034	0.604	0.094	0.268
09	0.41	0.208	0.114	0.268
10	0.236	0.226	0.234	0.304
11	0.23	0.366	0.266	0.138
12	0.568	0.164	0.156	0.112
13	0.318	0.026	0.61	0.046
14	0.13	0.046	0.804	0.02
15	0.578	0.184	0.138	0.1
16	0.646	0.006	0.282	0.066
17	0.024	0.004	0.96	0.012
18	0.358	0.08	0.556	0.006
19	0.872	0.078	0.04	0.01
20	0.03	0.84	0.038	0.092
21	0.086	0.112	0.08	0.722

PWM

	A	C	G	T
01	0.43	-3.325	0.838	-2.163
02	-1.64	-2.484	1.281	-2.096
03	-0.721	-0.25	-0.181	0.642
04	-1.114	0.046	-0.464	0.691
05	1.109	-2.819	-0.503	-1.189
06	-2.484	-3.126	1.32	-2.034
07	1.245	-1.298	-1.725	-2.584
08	-1.92	0.875	-0.958	0.069
09	0.49	-0.181	-0.771	0.069
10	-0.057	-0.1	-0.065	0.193
11	-0.082	0.377	0.061	-0.584
12	0.814	-0.415	-0.464	-0.788
13	0.238	-2.163	0.885	-1.64
14	-0.643	-1.64	1.16	-2.394
15	0.831	-0.302	-0.584	-0.898
16	0.942	-3.325	0.119	-1.298
17	-2.234	-3.573	1.336	-2.819
18	0.355	-1.114	0.793	-3.325
19	1.241	-1.138	-1.77	-2.961
20	-2.034	1.203	-1.818	-0.979
21	-1.044	-0.788	-1.114	1.053

Standard thresholds

P-value	Threshold
0.001	2.96081
0.0005	4.06506
0.0001	6.39961