ZSCA1.H14INVIVO.0.SM.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZSCA1.H14INVIVO.0.SM.D
Gene (human)	ZSCAN1 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	18
Consensus	nnbTKKCAGKGTGTGCdn
GC content	51.75%
Information content (bits; total / per base)	20.47 / 1.137
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	9803
Previous names	ZSCA1.H12INVIVO.0.SM.D

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	1.0	1.0	1.0	1.0	0.982	0.983
Overall, 2 experiments	best	1.0	1.0	1.0	1.0	0.997	0.996
Methyl HT-SELEX, 1 experiments	median	1.0	1.0	1.0	1.0	0.967	0.97
Methyl HT-SELEX, 1 experiments	best	1.0	1.0	1.0	1.0	0.967	0.97
Non-Methyl HT-SELEX, 1 experiments	median	1.0	1.0	1.0	1.0	0.997	0.996
Non-Methyl HT-SELEX, 1 experiments	best	1.0	1.0	1.0	1.0	0.997	0.996

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Other with up to three adjacent zinc fingers {2.3.2} (TFClass)
TF subfamily	SCAN {2.3.2.3} (TFClass)
TFClass ID	TFClass: 2.3.2.3.1
HGNC	HGNC:23712
MGI
EntrezGene (human)	GeneID:284312 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZSCA1_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8NBB4 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZSCA1.H14INVIVO.0.SM.D.pcm
PWM	ZSCA1.H14INVIVO.0.SM.D.pwm
PFM	ZSCA1.H14INVIVO.0.SM.D.pfm
Threshold to P-value map	ZSCA1.H14INVIVO.0.SM.D.thr
Motif in other formats
JASPAR format	ZSCA1.H14INVIVO.0.SM.D_jaspar_format.txt
MEME format	ZSCA1.H14INVIVO.0.SM.D_meme_format.meme
Transfac format	ZSCA1.H14INVIVO.0.SM.D_transfac_format.txt
Homer format	ZSCA1.H14INVIVO.0.SM.D_homer_format_0.001.txt ZSCA1.H14INVIVO.0.SM.D_homer_format_0.0005.txt ZSCA1.H14INVIVO.0.SM.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	1808.0	2067.0	3522.0	2406.0
02	3357.25	1332.25	2290.25	2823.25
03	1272.0	1313.0	1774.0	5444.0
04	76.0	968.0	121.0	8638.0
05	147.0	102.0	2810.0	6744.0
06	1132.0	966.0	1284.0	6421.0
07	572.0	8551.0	574.0	106.0
08	9301.0	74.0	154.0	274.0
09	19.0	6.0	9746.0	32.0
10	67.0	26.0	5922.0	3788.0
11	125.0	3.0	9672.0	3.0
12	3.0	4.0	14.0	9782.0
13	7.0	2.0	9783.0	11.0
14	4.0	14.0	18.0	9767.0
15	32.0	6.0	9751.0	14.0
16	13.0	8087.0	59.0	1644.0
17	4329.0	840.0	3536.0	1098.0
18	1603.5	3216.5	2699.5	2283.5

PFM

	A	C	G	T
01	0.184	0.211	0.359	0.245
02	0.342	0.136	0.234	0.288
03	0.13	0.134	0.181	0.555
04	0.008	0.099	0.012	0.881
05	0.015	0.01	0.287	0.688
06	0.115	0.099	0.131	0.655
07	0.058	0.872	0.059	0.011
08	0.949	0.008	0.016	0.028
09	0.002	0.001	0.994	0.003
10	0.007	0.003	0.604	0.386
11	0.013	0.0	0.987	0.0
12	0.0	0.0	0.001	0.998
13	0.001	0.0	0.998	0.001
14	0.0	0.001	0.002	0.996
15	0.003	0.001	0.995	0.001
16	0.001	0.825	0.006	0.168
17	0.442	0.086	0.361	0.112
18	0.164	0.328	0.275	0.233

PWM

	A	C	G	T
01	-0.304	-0.17	0.362	-0.018
02	0.314	-0.609	-0.068	0.141
03	-0.655	-0.623	-0.323	0.798
04	-3.445	-0.927	-2.99	1.259
05	-2.799	-3.158	0.137	1.012
06	-0.771	-0.93	-0.646	0.963
07	-1.452	1.249	-1.448	-3.12
08	1.333	-3.47	-2.753	-2.184
09	-4.746	-5.689	1.38	-4.27
10	-3.567	-4.462	0.882	0.435
11	-2.959	-6.138	1.372	-6.138
12	-6.138	-5.965	-5.014	1.383
13	-5.575	-6.347	1.384	-5.218
14	-5.965	-5.014	-4.795	1.382
15	-4.27	-5.689	1.38	-5.014
16	-5.077	1.193	-3.689	-0.399
17	0.569	-1.069	0.366	-0.802
18	-0.424	0.272	0.097	-0.071

Standard thresholds

P-value	Threshold
0.001	-2.71084
0.0005	-0.86109
0.0001	3.02916