ZSC31.H14INVITRO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZSC31.H14INVITRO.0.P.C
Gene (human)	ZSCAN31 (GeneCards)
Gene synonyms (human)	ZNF310P, ZNF323
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	18
Consensus	dKMWGCRGRGCMdKdMbv
GC content	58.95%
Information content (bits; total / per base)	13.845 / 0.769
Data sources	ChIP-Seq
Aligned words	787
Previous names	ZSC31.H12INVITRO.0.P.C

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.767	0.784	0.749	0.768	0.74	0.762	4.245	4.479	234.284	266.553

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.766	0.777	0.628	0.648	0.563	0.585
Overall, 2 experiments	best	0.83	0.835	0.662	0.683	0.579	0.606
Methyl HT-SELEX, 1 experiments	median	0.83	0.835	0.662	0.683	0.579	0.606
Methyl HT-SELEX, 1 experiments	best	0.83	0.835	0.662	0.683	0.579	0.606
Non-Methyl HT-SELEX, 1 experiments	median	0.703	0.718	0.595	0.613	0.546	0.565
Non-Methyl HT-SELEX, 1 experiments	best	0.703	0.718	0.595	0.613	0.546	0.565

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF24-like {2.3.3.10} (TFClass)
TFClass ID	TFClass: 2.3.3.10.7
HGNC	HGNC:14097
MGI
EntrezGene (human)	GeneID:64288 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZSC31_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q96LW9 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZSC31.H14INVITRO.0.P.C.pcm
PWM	ZSC31.H14INVITRO.0.P.C.pwm
PFM	ZSC31.H14INVITRO.0.P.C.pfm
Threshold to P-value map	ZSC31.H14INVITRO.0.P.C.thr
Motif in other formats
JASPAR format	ZSC31.H14INVITRO.0.P.C_jaspar_format.txt
MEME format	ZSC31.H14INVITRO.0.P.C_meme_format.meme
Transfac format	ZSC31.H14INVITRO.0.P.C_transfac_format.txt
Homer format	ZSC31.H14INVITRO.0.P.C_homer_format_0.001.txt ZSC31.H14INVITRO.0.P.C_homer_format_0.0005.txt ZSC31.H14INVITRO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	196.0	46.0	427.0	118.0
02	63.0	37.0	505.0	182.0
03	102.0	598.0	47.0	40.0
04	518.0	107.0	40.0	122.0
05	27.0	22.0	689.0	49.0
06	25.0	715.0	17.0	30.0
07	581.0	27.0	148.0	31.0
08	11.0	12.0	733.0	31.0
09	62.0	45.0	632.0	48.0
10	51.0	10.0	705.0	21.0
11	47.0	704.0	29.0	7.0
12	569.0	87.0	75.0	56.0
13	231.0	68.0	355.0	133.0
14	76.0	56.0	193.0	462.0
15	94.0	87.0	237.0	369.0
16	531.0	113.0	100.0	43.0
17	103.0	107.0	193.0	384.0
18	288.0	117.0	268.0	114.0

PFM

	A	C	G	T
01	0.249	0.058	0.543	0.15
02	0.08	0.047	0.642	0.231
03	0.13	0.76	0.06	0.051
04	0.658	0.136	0.051	0.155
05	0.034	0.028	0.875	0.062
06	0.032	0.909	0.022	0.038
07	0.738	0.034	0.188	0.039
08	0.014	0.015	0.931	0.039
09	0.079	0.057	0.803	0.061
10	0.065	0.013	0.896	0.027
11	0.06	0.895	0.037	0.009
12	0.723	0.111	0.095	0.071
13	0.294	0.086	0.451	0.169
14	0.097	0.071	0.245	0.587
15	0.119	0.111	0.301	0.469
16	0.675	0.144	0.127	0.055
17	0.131	0.136	0.245	0.488
18	0.366	0.149	0.341	0.145

PWM

	A	C	G	T
01	-0.004	-1.426	0.77	-0.506
02	-1.121	-1.635	0.937	-0.077
03	-0.649	1.106	-1.405	-1.561
04	0.963	-0.602	-1.561	-0.473
05	-1.935	-2.126	1.247	-1.365
06	-2.007	1.284	-2.364	-1.835
07	1.077	-1.935	-0.282	-1.804
08	-2.751	-2.675	1.309	-1.804
09	-1.137	-1.447	1.161	-1.385
10	-1.326	-2.834	1.27	-2.169
11	-1.405	1.269	-1.867	-3.131
12	1.056	-0.805	-0.951	-1.236
13	0.159	-1.047	0.586	-0.388
14	-0.938	-1.236	-0.019	0.849
15	-0.729	-0.805	0.185	0.625
16	0.988	-0.548	-0.669	-1.491
17	-0.64	-0.602	-0.019	0.665
18	0.378	-0.514	0.307	-0.54

Standard thresholds

P-value	Threshold
0.001	3.77006
0.0005	4.74111
0.0001	6.80131