ZSC23.H14RSNP.0.M.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZSC23.H14RSNP.0.M.D
Gene (human)	ZSCAN23 (GeneCards)
Gene synonyms (human)	ZNF390, ZNF453
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	18
Consensus	vRKGTGCTAATTACRhdn
GC content	39.32%
Information content (bits; total / per base)	19.989 / 1.11
Data sources	Methyl-HT-SELEX
Aligned words	1208
Previous names	ZSC23.H12RSNP.0.M.D

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Methyl HT-SELEX, 1 experiments	median	0.617	0.62	0.572	0.569	0.549	0.546
Methyl HT-SELEX, 1 experiments	best	0.617	0.62	0.572	0.569	0.549	0.546

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF24-like {2.3.3.10} (TFClass)
TFClass ID	TFClass: 2.3.3.10.3
HGNC	HGNC:21193
MGI
EntrezGene (human)	GeneID:222696 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZSC23_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q3MJ62 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	1
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZSC23.H14RSNP.0.M.D.pcm
PWM	ZSC23.H14RSNP.0.M.D.pwm
PFM	ZSC23.H14RSNP.0.M.D.pfm
Threshold to P-value map	ZSC23.H14RSNP.0.M.D.thr
Motif in other formats
JASPAR format	ZSC23.H14RSNP.0.M.D_jaspar_format.txt
MEME format	ZSC23.H14RSNP.0.M.D_meme_format.meme
Transfac format	ZSC23.H14RSNP.0.M.D_transfac_format.txt
Homer format	ZSC23.H14RSNP.0.M.D_homer_format_0.001.txt ZSC23.H14RSNP.0.M.D_homer_format_0.0005.txt ZSC23.H14RSNP.0.M.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	198.5	718.5	153.5	137.5
02	878.75	84.75	158.75	85.75
03	44.0	31.0	345.0	788.0
04	188.0	7.0	1003.0	10.0
05	50.0	47.0	12.0	1099.0
06	6.0	10.0	1186.0	6.0
07	8.0	1081.0	116.0	3.0
08	3.0	0.0	85.0	1120.0
09	1196.0	7.0	2.0	3.0
10	1152.0	1.0	52.0	3.0
11	3.0	4.0	87.0	1114.0
12	10.0	31.0	89.0	1078.0
13	1088.0	12.0	77.0	31.0
14	27.0	1064.0	88.0	29.0
15	644.0	36.0	489.0	39.0
16	608.0	251.0	171.0	178.0
17	630.25	148.25	273.25	156.25
18	344.5	315.5	313.5	234.5

PFM

	A	C	G	T
01	0.164	0.595	0.127	0.114
02	0.727	0.07	0.131	0.071
03	0.036	0.026	0.286	0.652
04	0.156	0.006	0.83	0.008
05	0.041	0.039	0.01	0.91
06	0.005	0.008	0.982	0.005
07	0.007	0.895	0.096	0.002
08	0.002	0.0	0.07	0.927
09	0.99	0.006	0.002	0.002
10	0.954	0.001	0.043	0.002
11	0.002	0.003	0.072	0.922
12	0.008	0.026	0.074	0.892
13	0.901	0.01	0.064	0.026
14	0.022	0.881	0.073	0.024
15	0.533	0.03	0.405	0.032
16	0.503	0.208	0.142	0.147
17	0.522	0.123	0.226	0.129
18	0.285	0.261	0.26	0.194

PWM

	A	C	G	T
01	-0.417	0.863	-0.671	-0.78
02	1.064	-1.256	-0.638	-1.244
03	-1.893	-2.227	0.132	0.955
04	-0.47	-3.544	1.196	-3.25
05	-1.769	-1.829	-3.093	1.287
06	-3.665	-3.25	1.364	-3.665
07	-3.437	1.271	-0.948	-4.153
08	-4.153	-5.143	-1.253	1.306
09	1.372	-3.544	-4.388	-4.153
10	1.335	-4.696	-1.731	-4.153
11	-4.153	-3.963	-1.23	1.301
12	-3.25	-2.227	-1.208	1.268
13	1.277	-3.093	-1.35	-2.227
14	-2.357	1.255	-1.219	-2.29
15	0.754	-2.085	0.48	-2.008
16	0.697	-0.184	-0.564	-0.525
17	0.733	-0.705	-0.099	-0.654
18	0.131	0.043	0.037	-0.251

Standard thresholds

P-value	Threshold
0.001	0.27491
0.0005	1.71296
0.0001	4.74861