MotifZNF48.H14INVITRO.0.PSG.A
Gene (human)ZNF48
(GeneCards)
Gene synonyms (human)ZNF553
Gene (mouse)Znf48
Gene synonyms (mouse)Zfp48, Zfp553, Znf553
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length26
ConsensusRACAGAGACARAGAGASASAGASASA
GC content48.21%
Information content (bits; total / per base)39.797 / 1.531
Data sourcesChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words2035
Previous names

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best Centrality, median Centrality, best
Overall 2 (4) 0.53 0.584 0.428 0.471 0.64 0.66 4.892 8.77

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
overall, 3 experiments median 0.667 0.639 0.604 0.588 0.566 0.558
best 0.883 0.841 0.804 0.764 0.716 0.692
Lysate, 2 experiments median 0.643 0.615 0.591 0.575 0.559 0.551
best 0.667 0.639 0.604 0.588 0.566 0.558
GFPIVT, 1 experiments median 0.883 0.841 0.804 0.764 0.716 0.692
best 0.883 0.841 0.804 0.764 0.716 0.692

Genomic HT-SELEX benchmarking Centrality pseudo-auROC auROC auPR
overall, 3 experiments median 171.523 0.963 0.923 0.829
best 376.328 0.982 0.933 0.852
Lysate, 2 experiments median 360.724 0.966 0.928 0.851
best 376.328 0.978 0.933 0.852
GFPIVT, 1 experiments median 106.237 0.963 0.892 0.785
best 171.523 0.982 0.926 0.829
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMultiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamilyUnclassified {2.3.4.0} (TFClass)
TFClass IDTFClass: 2.3.4.0.48
HGNCHGNC:13114
MGIMGI:2384725
EntrezGene (human)GeneID:197407
(SSTAR profile)
EntrezGene (mouse)GeneID:233887
(SSTAR profile)
UniProt ID (human)ZNF48_HUMAN
UniProt ID (mouse)ZNF48_MOUSE
UniProt AC (human)Q96MX3
(TFClass)
UniProt AC (mouse)Q3US17
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 3 overall: 2 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX 3 overall: 2 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq 0
PBM 0
PCM
ACGT
01441.7565.751471.7555.75
021894.039.085.017.0
0337.01951.026.021.0
042017.00.018.00.0
058.00.02027.00.0
062035.00.00.00.0
075.00.02029.01.0
082007.06.021.01.0
090.01934.02.099.0
101957.01.077.00.0
11412.0105.01509.09.0
121860.02.0173.00.0
1374.012.01949.00.0
142021.00.014.00.0
159.0387.01631.08.0
162012.00.021.02.0
17200.01412.0349.074.0
181929.00.0106.00.0
1947.0738.01208.042.0
201927.00.0103.05.0
2121.0141.01865.08.0
222032.00.02.01.0
237.0734.01256.038.0
241974.00.061.00.0
25138.01115.0727.055.0
261870.2534.2598.2532.25
PFM
ACGT
010.2170.0320.7230.027
020.9310.0190.0420.008
030.0180.9590.0130.01
040.9910.00.0090.0
050.0040.00.9960.0
061.00.00.00.0
070.0020.00.9970.0
080.9860.0030.010.0
090.00.950.0010.049
100.9620.00.0380.0
110.2020.0520.7420.004
120.9140.0010.0850.0
130.0360.0060.9580.0
140.9930.00.0070.0
150.0040.190.8010.004
160.9890.00.010.001
170.0980.6940.1710.036
180.9480.00.0520.0
190.0230.3630.5940.021
200.9470.00.0510.002
210.010.0690.9160.004
220.9990.00.0010.0
230.0030.3610.6170.019
240.970.00.030.0
250.0680.5480.3570.027
260.9190.0170.0480.016
PWM
ACGT
01-0.141-2.0211.06-2.181
021.312-2.524-1.771-3.296
03-2.5751.341-2.907-3.104
041.375-5.591-3.245-5.591
05-3.943-5.5911.38-5.591
061.383-5.591-5.591-5.591
07-4.304-5.5911.381-5.169
081.37-4.168-3.104-5.169
09-5.5911.333-4.874-1.622
101.344-5.169-1.867-5.591
11-0.21-1.5641.085-3.847
121.294-4.874-1.071-5.591
13-1.906-3.6031.34-5.591
141.377-5.591-3.469-5.591
15-3.847-0.2721.162-3.943
161.372-5.591-3.104-4.874
17-0.9281.018-0.375-1.906
181.33-5.591-1.554-5.591
19-2.3460.3710.863-2.454
201.329-5.591-1.583-4.304
21-3.104-1.2741.296-3.943
221.382-5.591-4.874-5.169
23-4.0490.3650.902-2.549
241.353-5.591-2.094-5.591
25-1.2950.7830.356-2.194
261.299-2.648-1.629-2.705
Standard thresholds
P-value Threshold
0.001 -19.82289
0.0005 -17.27119
0.0001 -11.79319