ZN845.H14INVITRO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN845.H14INVITRO.0.PSG.A
Gene (human)	ZNF845 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	23
Consensus	dKRdRYKvGAGRGvvdvdddddv
GC content	56.77%
Information content (bits; total / per base)	12.964 / 0.564
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	9998
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.74	0.748	0.63	0.641	0.773	0.773	35.653	36.886

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 3 experiments	median	0.513	0.518	0.526	0.517	0.536	0.518
GFPIVT, 3 experiments	best	0.986	0.98	0.935	0.923	0.804	0.807

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	4.8	0.848	0.692	0.492
GFPIVT, 2 experiments	best	656.796	0.944	0.913	0.859

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF813-like {2.3.3.72} (TFClass)
TFClass ID	TFClass: 2.3.3.72.7
HGNC	HGNC:25112
MGI
EntrezGene (human)	GeneID:91664 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN845_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q96IR2 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	3 overall: 0 Lysate, 0 IVT, 3 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZN845.H14INVITRO.0.PSG.A.pcm
PWM	ZN845.H14INVITRO.0.PSG.A.pwm
PFM	ZN845.H14INVITRO.0.PSG.A.pfm
Threshold to P-value map	ZN845.H14INVITRO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZN845.H14INVITRO.0.PSG.A_jaspar_format.txt
MEME format	ZN845.H14INVITRO.0.PSG.A_meme_format.meme
Transfac format	ZN845.H14INVITRO.0.PSG.A_transfac_format.txt
Homer format	ZN845.H14INVITRO.0.PSG.A_homer_format_0.001.txt ZN845.H14INVITRO.0.PSG.A_homer_format_0.0005.txt ZN845.H14INVITRO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	2120.25	735.25	3887.25	3255.25
02	1293.75	627.75	6563.75	1512.75
03	1117.0	268.0	7978.0	635.0
04	1194.0	568.0	4875.0	3361.0
05	4753.0	1389.0	3635.0	221.0
06	1432.0	6513.0	569.0	1484.0
07	693.0	113.0	2009.0	7183.0
08	3420.0	3221.0	2574.0	783.0
09	311.0	192.0	9422.0	73.0
10	8349.0	29.0	360.0	1260.0
11	96.0	19.0	9863.0	20.0
12	7902.0	215.0	1082.0	799.0
13	562.0	231.0	8479.0	726.0
14	2935.0	3954.0	1995.0	1114.0
15	5065.0	1298.0	2730.0	905.0
16	3534.0	1064.0	2678.0	2722.0
17	1762.0	1566.0	5423.0	1247.0
18	3307.0	1052.0	2553.0	3086.0
19	1519.0	994.0	5229.0	2256.0
20	2424.0	1319.0	4730.0	1525.0
21	2389.0	958.0	5499.0	1152.0
22	2354.75	1245.75	4270.75	2126.75
23	1974.5	2096.5	4461.5	1465.5

PFM

	A	C	G	T
01	0.212	0.074	0.389	0.326
02	0.129	0.063	0.657	0.151
03	0.112	0.027	0.798	0.064
04	0.119	0.057	0.488	0.336
05	0.475	0.139	0.364	0.022
06	0.143	0.651	0.057	0.148
07	0.069	0.011	0.201	0.718
08	0.342	0.322	0.257	0.078
09	0.031	0.019	0.942	0.007
10	0.835	0.003	0.036	0.126
11	0.01	0.002	0.986	0.002
12	0.79	0.022	0.108	0.08
13	0.056	0.023	0.848	0.073
14	0.294	0.395	0.2	0.111
15	0.507	0.13	0.273	0.091
16	0.353	0.106	0.268	0.272
17	0.176	0.157	0.542	0.125
18	0.331	0.105	0.255	0.309
19	0.152	0.099	0.523	0.226
20	0.242	0.132	0.473	0.153
21	0.239	0.096	0.55	0.115
22	0.236	0.125	0.427	0.213
23	0.197	0.21	0.446	0.147

PWM

	A	C	G	T
01	-0.164	-1.221	0.441	0.264
02	-0.658	-1.379	0.965	-0.502
03	-0.804	-2.225	1.16	-1.368
04	-0.738	-1.479	0.668	0.296
05	0.642	-0.587	0.374	-2.416
06	-0.556	0.957	-1.477	-0.521
07	-1.28	-3.077	-0.218	1.055
08	0.313	0.253	0.029	-1.159
09	-2.078	-2.555	1.326	-3.503
10	1.205	-4.381	-1.932	-0.684
11	-3.237	-4.766	1.372	-4.72
12	1.15	-2.443	-0.836	-1.139
13	-1.489	-2.372	1.221	-1.234
14	0.16	0.458	-0.225	-0.807
15	0.706	-0.654	0.088	-1.014
16	0.346	-0.853	0.069	0.085
17	-0.349	-0.467	0.774	-0.694
18	0.28	-0.864	0.021	0.211
19	-0.497	-0.921	0.738	-0.102
20	-0.031	-0.638	0.637	-0.494
21	-0.045	-0.958	0.788	-0.774
22	-0.06	-0.695	0.535	-0.161
23	-0.236	-0.176	0.579	-0.533

Standard thresholds

P-value	Threshold
0.001	3.93411
0.0005	4.91766
0.0001	6.96021