ZN831.H14RSNP.0.PSGI.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN831.H14RSNP.0.PSGI.D
Gene (human)	ZNF831 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	11
Consensus	bGGRWTCCCCh
GC content	62.25%
Information content (bits; total / per base)	13.266 / 1.206
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq
Aligned words	500
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.792	0.804	0.627	0.642	0.588	0.68	15.881	23.143

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
overall, 2 experiments	median	0.998	0.996	0.996	0.992	0.989	0.984
overall, 2 experiments	best	0.999	0.999	0.998	0.997	0.996	0.994
IVT, 1 experiments	median	0.996	0.992	0.993	0.988	0.982	0.974
IVT, 1 experiments	best	0.996	0.992	0.993	0.988	0.982	0.974
GFPIVT, 1 experiments	median	0.999	0.999	0.998	0.997	0.996	0.994
GFPIVT, 1 experiments	best	0.999	0.999	0.998	0.997	0.996	0.994

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
overall, 2 experiments	median	220.554	0.803	0.907	0.83
overall, 2 experiments	best	349.051	0.859	0.942	0.877
IVT, 1 experiments	median	232.638	0.697	0.875	0.749
IVT, 1 experiments	best	232.638	0.697	0.875	0.749
GFPIVT, 1 experiments	median	208.469	0.848	0.908	0.846
GFPIVT, 1 experiments	best	349.051	0.859	0.942	0.877

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 1 experiments	median	0.926	0.887	0.874	0.831	0.778	0.752
Overall, 1 experiments	best	0.926	0.887	0.874	0.831	0.778	0.752

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Other with up to three adjacent zinc fingers {2.3.2} (TFClass)
TF subfamily	Other {2.3.2.4} (TFClass)
TFClass ID	TFClass: 2.3.2.4.257
HGNC
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	ZN831_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q5JPB2 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	no

ChIP-Seq	2 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 1 IVT, 1 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 1 IVT, 1 GFPIVT
SMiLE-Seq	1
PBM	0

PCM	ZN831.H14RSNP.0.PSGI.D.pcm
PWM	ZN831.H14RSNP.0.PSGI.D.pwm
PFM	ZN831.H14RSNP.0.PSGI.D.pfm
Threshold to P-value map	ZN831.H14RSNP.0.PSGI.D.thr
Motif in other formats
JASPAR format	ZN831.H14RSNP.0.PSGI.D_jaspar_format.txt
MEME format	ZN831.H14RSNP.0.PSGI.D_meme_format.meme
Transfac format	ZN831.H14RSNP.0.PSGI.D_transfac_format.txt
Homer format	ZN831.H14RSNP.0.PSGI.D_homer_format_0.001.txt ZN831.H14RSNP.0.PSGI.D_homer_format_0.0005.txt ZN831.H14RSNP.0.PSGI.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	52.0	93.0	122.0	233.0
02	5.0	2.0	492.0	1.0
03	0.0	1.0	494.0	5.0
04	288.0	1.0	208.0	3.0
05	307.0	0.0	67.0	126.0
06	0.0	30.0	8.0	462.0
07	1.0	397.0	4.0	98.0
08	3.0	396.0	0.0	101.0
09	0.0	499.0	0.0	1.0
10	4.0	461.0	10.0	25.0
11	130.0	92.0	47.0	231.0

PFM

	A	C	G	T
01	0.104	0.186	0.244	0.466
02	0.01	0.004	0.984	0.002
03	0.0	0.002	0.988	0.01
04	0.576	0.002	0.416	0.006
05	0.614	0.0	0.134	0.252
06	0.0	0.06	0.016	0.924
07	0.002	0.794	0.008	0.196
08	0.006	0.792	0.0	0.202
09	0.0	0.998	0.0	0.002
10	0.008	0.922	0.02	0.05
11	0.26	0.184	0.094	0.462

PWM

	A	C	G	T
01	-0.86	-0.291	-0.024	0.617
02	-2.961	-3.573	1.361	-3.903
03	-4.4	-3.903	1.365	-2.961
04	0.828	-3.903	0.504	-3.325
05	0.891	-4.4	-0.613	0.008
06	-4.4	-1.389	-2.584	1.298
07	-3.903	1.147	-3.126	-0.24
08	-3.325	1.145	-4.4	-0.21
09	-4.4	1.375	-4.4	-3.903
10	-3.126	1.296	-2.394	-1.561
11	0.039	-0.302	-0.958	0.608

Standard thresholds

P-value	Threshold
0.001	3.52207
0.0005	4.703605
0.0001	7.027175