| Motif | ZN790.H14INVIVO.1.P.C |
| Gene (human) | ZNF790 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | C |
| Motif | ZN790.H14INVIVO.1.P.C |
| Gene (human) | ZNF790 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | C |
| Motif length | 10 |
| Consensus | RMdGCTCCCh |
| GC content | 56.92% |
| Information content (bits; total / per base) | 9.696 / 0.97 |
| Data sources | ChIP-Seq |
| Aligned words | 120 |
| Previous names | ZN790.H12INVIVO.1.P.C |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 1 (2) | 0.764 | 0.764 | 0.639 | 0.639 | 0.729 | 0.729 | 2.242 | 2.242 | 15.62 | 15.62 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | Unclassified {2.3.3.0} (TFClass) |
| TFClass ID | TFClass: 2.3.3.0.158 |
| HGNC | HGNC:33114 |
| MGI | |
| EntrezGene (human) | GeneID:388536 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | ZN790_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | Q6PG37 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | ZN790.H14INVIVO.1.P.C.pcm |
| PWM | ZN790.H14INVIVO.1.P.C.pwm |
| PFM | ZN790.H14INVIVO.1.P.C.pfm |
| Threshold to P-value map | ZN790.H14INVIVO.1.P.C.thr |
| Motif in other formats | |
| JASPAR format | ZN790.H14INVIVO.1.P.C_jaspar_format.txt |
| MEME format | ZN790.H14INVIVO.1.P.C_meme_format.meme |
| Transfac format | ZN790.H14INVIVO.1.P.C_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 73.0 | 13.0 | 30.0 | 4.0 |
| 02 | 44.0 | 62.0 | 10.0 | 4.0 |
| 03 | 56.0 | 8.0 | 13.0 | 43.0 |
| 04 | 0.0 | 3.0 | 115.0 | 2.0 |
| 05 | 25.0 | 94.0 | 0.0 | 1.0 |
| 06 | 10.0 | 3.0 | 0.0 | 107.0 |
| 07 | 0.0 | 83.0 | 1.0 | 36.0 |
| 08 | 2.0 | 86.0 | 0.0 | 32.0 |
| 09 | 1.0 | 110.0 | 0.0 | 9.0 |
| 10 | 49.0 | 46.0 | 6.0 | 19.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.608 | 0.108 | 0.25 | 0.033 |
| 02 | 0.367 | 0.517 | 0.083 | 0.033 |
| 03 | 0.467 | 0.067 | 0.108 | 0.358 |
| 04 | 0.0 | 0.025 | 0.958 | 0.017 |
| 05 | 0.208 | 0.783 | 0.0 | 0.008 |
| 06 | 0.083 | 0.025 | 0.0 | 0.892 |
| 07 | 0.0 | 0.692 | 0.008 | 0.3 |
| 08 | 0.017 | 0.717 | 0.0 | 0.267 |
| 09 | 0.008 | 0.917 | 0.0 | 0.075 |
| 10 | 0.408 | 0.383 | 0.05 | 0.158 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.866 | -0.787 | 0.0 | -1.792 |
| 02 | 0.371 | 0.706 | -1.025 | -1.792 |
| 03 | 0.606 | -1.221 | -0.787 | 0.348 |
| 04 | -3.261 | -2.006 | 1.315 | -2.278 |
| 05 | -0.175 | 1.116 | -3.261 | -2.653 |
| 06 | -1.025 | -2.006 | -3.261 | 1.244 |
| 07 | -3.261 | 0.993 | -2.653 | 0.176 |
| 08 | -2.278 | 1.028 | -3.261 | 0.062 |
| 09 | -2.653 | 1.271 | -3.261 | -1.118 |
| 10 | 0.476 | 0.414 | -1.467 | -0.435 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.968985 |
| 0.0005 | 5.73892 |
| 0.0001 | 7.31609 |