ZN778.H14RSNP.1.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN778.H14RSNP.1.P.D
Gene (human)	ZNF778 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	D

Motif length	31
Consensus	YKGCATCTGGYRAGGRCCTTCWTGCTGbdKY
GC content	57.23%
Information content (bits; total / per base)	38.844 / 1.253
Data sources	ChIP-Seq
Aligned words	538
Previous names	ZN778.H12RSNP.1.P.D

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (9)	0.78	0.903	0.755	0.882	0.748	0.884	10.11	14.582	298.921	456.602

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.63
HGNC	HGNC:26479
MGI
EntrezGene (human)	GeneID:197320 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN778_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q96MU6 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZN778.H14RSNP.1.P.D.pcm
PWM	ZN778.H14RSNP.1.P.D.pwm
PFM	ZN778.H14RSNP.1.P.D.pfm
Threshold to P-value map	ZN778.H14RSNP.1.P.D.thr
Motif in other formats
JASPAR format	ZN778.H14RSNP.1.P.D_jaspar_format.txt
MEME format	ZN778.H14RSNP.1.P.D_meme_format.meme
Transfac format	ZN778.H14RSNP.1.P.D_transfac_format.txt
Homer format	ZN778.H14RSNP.1.P.D_homer_format_0.001.txt ZN778.H14RSNP.1.P.D_homer_format_0.0005.txt ZN778.H14RSNP.1.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	14.0	264.0	25.0	235.0
02	115.0	7.0	283.0	133.0
03	16.0	6.0	491.0	25.0
04	16.0	425.0	14.0	83.0
05	421.0	9.0	104.0	4.0
06	3.0	9.0	2.0	524.0
07	2.0	525.0	5.0	6.0
08	5.0	22.0	2.0	509.0
09	14.0	3.0	462.0	59.0
10	18.0	14.0	490.0	16.0
11	18.0	163.0	18.0	339.0
12	152.0	25.0	342.0	19.0
13	474.0	13.0	28.0	23.0
14	7.0	2.0	521.0	8.0
15	15.0	5.0	509.0	9.0
16	121.0	33.0	369.0	15.0
17	2.0	510.0	8.0	18.0
18	6.0	518.0	1.0	13.0
19	8.0	54.0	2.0	474.0
20	6.0	14.0	12.0	506.0
21	5.0	517.0	10.0	6.0
22	73.0	46.0	16.0	403.0
23	5.0	1.0	15.0	517.0
24	4.0	3.0	526.0	5.0
25	2.0	527.0	1.0	8.0
26	3.0	8.0	2.0	525.0
27	37.0	25.0	465.0	11.0
28	39.0	156.0	65.0	278.0
29	164.0	24.0	259.0	91.0
30	25.0	49.0	78.0	386.0
31	29.0	378.0	65.0	66.0

PFM

	A	C	G	T
01	0.026	0.491	0.046	0.437
02	0.214	0.013	0.526	0.247
03	0.03	0.011	0.913	0.046
04	0.03	0.79	0.026	0.154
05	0.783	0.017	0.193	0.007
06	0.006	0.017	0.004	0.974
07	0.004	0.976	0.009	0.011
08	0.009	0.041	0.004	0.946
09	0.026	0.006	0.859	0.11
10	0.033	0.026	0.911	0.03
11	0.033	0.303	0.033	0.63
12	0.283	0.046	0.636	0.035
13	0.881	0.024	0.052	0.043
14	0.013	0.004	0.968	0.015
15	0.028	0.009	0.946	0.017
16	0.225	0.061	0.686	0.028
17	0.004	0.948	0.015	0.033
18	0.011	0.963	0.002	0.024
19	0.015	0.1	0.004	0.881
20	0.011	0.026	0.022	0.941
21	0.009	0.961	0.019	0.011
22	0.136	0.086	0.03	0.749
23	0.009	0.002	0.028	0.961
24	0.007	0.006	0.978	0.009
25	0.004	0.98	0.002	0.015
26	0.006	0.015	0.004	0.976
27	0.069	0.046	0.864	0.02
28	0.072	0.29	0.121	0.517
29	0.305	0.045	0.481	0.169
30	0.046	0.091	0.145	0.717
31	0.054	0.703	0.121	0.123

PWM

	A	C	G	T
01	-2.168	0.669	-1.633	0.553
02	-0.155	-2.765	0.738	-0.011
03	-2.047	-2.889	1.286	-1.633
04	-2.047	1.143	-2.168	-0.476
05	1.133	-2.555	-0.254	-3.195
06	-3.393	-2.555	-3.64	1.351
07	-3.64	1.353	-3.03	-2.889
08	-3.03	-1.753	-3.64	1.322
09	-2.168	-3.393	1.226	-0.809
10	-1.939	-2.168	1.284	-2.047
11	-1.939	0.19	-1.939	0.917
12	0.121	-1.633	0.926	-1.889
13	1.251	-2.234	-1.526	-1.712
14	-2.765	-3.64	1.346	-2.654
15	-2.105	-3.03	1.322	-2.555
16	-0.104	-1.37	1.002	-2.105
17	-3.64	1.324	-2.654	-1.939
18	-2.889	1.34	-3.969	-2.234
19	-2.654	-0.896	-3.64	1.251
20	-2.889	-2.168	-2.305	1.316
21	-3.03	1.338	-2.465	-2.889
22	-0.601	-1.051	-2.047	1.09
23	-3.03	-3.969	-2.105	1.338
24	-3.195	-3.393	1.355	-3.03
25	-3.64	1.357	-3.969	-2.654
26	-3.393	-2.654	-3.64	1.353
27	-1.261	-1.633	1.232	-2.382
28	-1.21	0.147	-0.715	0.72
29	0.196	-1.672	0.65	-0.385
30	-1.633	-0.99	-0.537	1.047
31	-1.493	1.026	-0.715	-0.7

Standard thresholds

P-value	Threshold
0.001	-10.44064
0.0005	-8.52064
0.0001	-4.37954