ZN768.H14INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN768.H14INVIVO.0.P.B
Gene (human)	ZNF768 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf768
Gene synonyms (mouse)	Zfp768
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	23
Consensus	RGYWCAGAGAGGKYRRGbvRYYK
GC content	50.28%
Information content (bits; total / per base)	25.678 / 1.116
Data sources	ChIP-Seq
Aligned words	989
Previous names	ZN768.H12INVIVO.0.P.B

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	4 (22)	0.919	0.976	0.897	0.968	0.932	0.988	10.666	13.602	515.426	745.276

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.95
HGNC	HGNC:26273
MGI	MGI:2384582
EntrezGene (human)	GeneID:79724 (SSTAR profile)
EntrezGene (mouse)	GeneID:233890 (SSTAR profile)
UniProt ID (human)	ZN768_HUMAN
UniProt ID (mouse)	ZN768_MOUSE
UniProt AC (human)	Q9H5H4 (TFClass)
UniProt AC (mouse)	Q8R0T2 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	4 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZN768.H14INVIVO.0.P.B.pcm
PWM	ZN768.H14INVIVO.0.P.B.pwm
PFM	ZN768.H14INVIVO.0.P.B.pfm
Threshold to P-value map	ZN768.H14INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	ZN768.H14INVIVO.0.P.B_jaspar_format.txt
MEME format	ZN768.H14INVIVO.0.P.B_meme_format.meme
Transfac format	ZN768.H14INVIVO.0.P.B_transfac_format.txt
Homer format	ZN768.H14INVIVO.0.P.B_homer_format_0.001.txt ZN768.H14INVIVO.0.P.B_homer_format_0.0005.txt ZN768.H14INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	257.0	17.0	673.0	42.0
02	102.0	27.0	840.0	20.0
03	101.0	770.0	13.0	105.0
04	259.0	218.0	4.0	508.0
05	2.0	978.0	5.0	4.0
06	979.0	6.0	1.0	3.0
07	1.0	3.0	984.0	1.0
08	975.0	5.0	6.0	3.0
09	20.0	11.0	957.0	1.0
10	951.0	6.0	13.0	19.0
11	91.0	25.0	861.0	12.0
12	20.0	10.0	950.0	9.0
13	4.0	102.0	235.0	648.0
14	78.0	167.0	91.0	653.0
15	673.0	73.0	195.0	48.0
16	770.0	23.0	137.0	59.0
17	39.0	34.0	864.0	52.0
18	101.0	248.0	109.0	531.0
19	452.0	164.0	301.0	72.0
20	781.0	70.0	89.0	49.0
21	45.0	706.0	64.0	174.0
22	52.0	158.0	29.0	750.0
23	64.0	95.0	101.0	729.0

PFM

	A	C	G	T
01	0.26	0.017	0.68	0.042
02	0.103	0.027	0.849	0.02
03	0.102	0.779	0.013	0.106
04	0.262	0.22	0.004	0.514
05	0.002	0.989	0.005	0.004
06	0.99	0.006	0.001	0.003
07	0.001	0.003	0.995	0.001
08	0.986	0.005	0.006	0.003
09	0.02	0.011	0.968	0.001
10	0.962	0.006	0.013	0.019
11	0.092	0.025	0.871	0.012
12	0.02	0.01	0.961	0.009
13	0.004	0.103	0.238	0.655
14	0.079	0.169	0.092	0.66
15	0.68	0.074	0.197	0.049
16	0.779	0.023	0.139	0.06
17	0.039	0.034	0.874	0.053
18	0.102	0.251	0.11	0.537
19	0.457	0.166	0.304	0.073
20	0.79	0.071	0.09	0.05
21	0.046	0.714	0.065	0.176
22	0.053	0.16	0.029	0.758
23	0.065	0.096	0.102	0.737

PWM

	A	C	G	T
01	0.038	-2.588	0.997	-1.739
02	-0.876	-2.16	1.218	-2.439
03	-0.885	1.131	-2.828	-0.847
04	0.046	-0.125	-3.773	0.717
05	-4.203	1.37	-3.612	-3.773
06	1.371	-3.473	-4.515	-3.965
07	-4.515	-3.965	1.376	-4.515
08	1.367	-3.612	-3.473	-3.965
09	-2.439	-2.974	1.348	-4.515
10	1.342	-3.473	-2.828	-2.486
11	-0.988	-2.232	1.243	-2.898
12	-2.439	-3.056	1.341	-3.145
13	-3.773	-0.876	-0.05	0.959
14	-1.139	-0.389	-0.988	0.967
15	0.997	-1.204	-0.236	-1.611
16	1.131	-2.31	-0.585	-1.411
17	-1.811	-1.942	1.246	-1.533
18	-0.885	0.003	-0.81	0.761
19	0.6	-0.407	0.195	-1.217
20	1.145	-1.245	-1.01	-1.591
21	-1.673	1.045	-1.332	-0.348
22	-1.533	-0.444	-2.092	1.105
23	-1.332	-0.945	-0.885	1.077

Standard thresholds

P-value	Threshold
0.001	-2.74509
0.0005	-1.13044
0.0001	2.31471