ZN700.H14INVIVO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN700.H14INVIVO.0.PSG.A
Gene (human)	ZNF700 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	12
Consensus	dnRRCGGTMMYb
GC content	52.22%
Information content (bits; total / per base)	10.542 / 0.878
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	7895
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.767	0.767	0.656	0.658	0.691	0.709	73.596	95.824

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 3 experiments	median	0.663	0.621	0.619	0.587	0.589	0.565
GFPIVT, 3 experiments	best	0.9	0.863	0.823	0.784	0.73	0.707

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	13.886	0.551	0.616	0.466
GFPIVT, 1 experiments	best	83.237	0.621	0.63	0.466

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.212
HGNC	HGNC:25292
MGI
EntrezGene (human)	GeneID:90592 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN700_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9H0M5 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	3 overall: 0 Lysate, 0 IVT, 3 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZN700.H14INVIVO.0.PSG.A.pcm
PWM	ZN700.H14INVIVO.0.PSG.A.pwm
PFM	ZN700.H14INVIVO.0.PSG.A.pfm
Threshold to P-value map	ZN700.H14INVIVO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZN700.H14INVIVO.0.PSG.A_jaspar_format.txt
MEME format	ZN700.H14INVIVO.0.PSG.A_meme_format.meme
Transfac format	ZN700.H14INVIVO.0.PSG.A_transfac_format.txt
Homer format	ZN700.H14INVIVO.0.PSG.A_homer_format_0.001.txt ZN700.H14INVIVO.0.PSG.A_homer_format_0.0005.txt ZN700.H14INVIVO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	1864.5	619.5	4219.5	1191.5
02	3740.75	1354.75	1399.75	1399.75
03	3776.0	268.0	3483.0	368.0
04	4934.0	112.0	2806.0	43.0
05	24.0	7655.0	0.0	216.0
06	3103.0	3.0	4788.0	1.0
07	967.0	7.0	6912.0	9.0
08	0.0	0.0	0.0	7895.0
09	4865.0	1757.0	198.0	1075.0
10	911.0	6075.0	702.0	207.0
11	280.5	3541.5	303.5	3769.5
12	918.75	1424.75	1841.75	3709.75

PFM

	A	C	G	T
01	0.236	0.078	0.534	0.151
02	0.474	0.172	0.177	0.177
03	0.478	0.034	0.441	0.047
04	0.625	0.014	0.355	0.005
05	0.003	0.97	0.0	0.027
06	0.393	0.0	0.606	0.0
07	0.122	0.001	0.875	0.001
08	0.0	0.0	0.0	1.0
09	0.616	0.223	0.025	0.136
10	0.115	0.769	0.089	0.026
11	0.036	0.449	0.038	0.477
12	0.116	0.18	0.233	0.47

PWM

	A	C	G	T
01	-0.057	-1.156	0.759	-0.504
02	0.639	-0.376	-0.343	-0.343
03	0.648	-1.99	0.567	-1.675
04	0.916	-2.85	0.351	-3.777
05	-4.321	1.355	-6.781	-2.203
06	0.452	-5.932	0.886	-6.412
07	-0.712	-5.365	1.253	-5.169
08	-6.781	-6.781	-6.781	1.385
09	0.901	-0.116	-2.289	-0.607
10	-0.772	1.123	-1.032	-2.245
11	-1.944	0.584	-1.866	0.646
12	-0.763	-0.326	-0.069	0.63

Standard thresholds

P-value	Threshold
0.001	4.702395
0.0005	5.676865
0.0001	7.478075