ZN696.H14CORE.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN696.H14CORE.0.PSG.A
Gene (human)	ZNF696 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	23
Consensus	ddbGTTAAGAARGRbbCdGMKKn
GC content	46.95%
Information content (bits; total / per base)	23.406 / 1.018
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	1951
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.848	0.864	0.863	0.871	0.868	0.882	61.509	63.62

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.997	0.997	0.832	0.847	0.673	0.71
GFPIVT, 1 experiments	best	0.997	0.997	0.832	0.847	0.673	0.71

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	190.886	0.917	0.902	0.909
GFPIVT, 1 experiments	best	521.252	0.923	0.921	0.919

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.78
HGNC	HGNC:25872
MGI
EntrezGene (human)	GeneID:79943 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN696_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9H7X3 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZN696.H14CORE.0.PSG.A.pcm
PWM	ZN696.H14CORE.0.PSG.A.pwm
PFM	ZN696.H14CORE.0.PSG.A.pfm
Threshold to P-value map	ZN696.H14CORE.0.PSG.A.thr
Motif in other formats
JASPAR format	ZN696.H14CORE.0.PSG.A_jaspar_format.txt
MEME format	ZN696.H14CORE.0.PSG.A_meme_format.meme
Transfac format	ZN696.H14CORE.0.PSG.A_transfac_format.txt
Homer format	ZN696.H14CORE.0.PSG.A_homer_format_0.001.txt ZN696.H14CORE.0.PSG.A_homer_format_0.0005.txt ZN696.H14CORE.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	686.25	260.25	582.25	422.25
02	662.25	203.25	795.25	290.25
03	208.0	487.0	514.0	742.0
04	9.0	3.0	1937.0	2.0
05	37.0	6.0	316.0	1592.0
06	0.0	3.0	2.0	1946.0
07	1941.0	7.0	3.0	0.0
08	1937.0	5.0	8.0	1.0
09	1.0	3.0	1947.0	0.0
10	1753.0	139.0	10.0	49.0
11	1875.0	8.0	48.0	20.0
12	1464.0	27.0	243.0	217.0
13	5.0	10.0	1919.0	17.0
14	602.0	185.0	1103.0	61.0
15	153.0	200.0	537.0	1061.0
16	159.0	319.0	570.0	903.0
17	137.0	1713.0	69.0	32.0
18	577.0	243.0	258.0	873.0
19	51.0	17.0	1867.0	16.0
20	1201.0	338.0	163.0	249.0
21	156.0	54.0	1470.0	271.0
22	131.75	216.75	1175.75	426.75
23	372.0	361.0	724.0	494.0

PFM

	A	C	G	T
01	0.352	0.133	0.298	0.216
02	0.339	0.104	0.408	0.149
03	0.107	0.25	0.263	0.38
04	0.005	0.002	0.993	0.001
05	0.019	0.003	0.162	0.816
06	0.0	0.002	0.001	0.997
07	0.995	0.004	0.002	0.0
08	0.993	0.003	0.004	0.001
09	0.001	0.002	0.998	0.0
10	0.899	0.071	0.005	0.025
11	0.961	0.004	0.025	0.01
12	0.75	0.014	0.125	0.111
13	0.003	0.005	0.984	0.009
14	0.309	0.095	0.565	0.031
15	0.078	0.103	0.275	0.544
16	0.081	0.164	0.292	0.463
17	0.07	0.878	0.035	0.016
18	0.296	0.125	0.132	0.447
19	0.026	0.009	0.957	0.008
20	0.616	0.173	0.084	0.128
21	0.08	0.028	0.753	0.139
22	0.068	0.111	0.603	0.219
23	0.191	0.185	0.371	0.253

PWM

	A	C	G	T
01	0.34	-0.625	0.176	-0.144
02	0.305	-0.87	0.487	-0.516
03	-0.847	-0.002	0.052	0.418
04	-3.805	-4.606	1.376	-4.834
05	-2.533	-4.128	-0.432	1.18
06	-5.555	-4.606	-4.834	1.381
07	1.378	-4.008	-4.606	-5.555
08	1.376	-4.263	-3.902	-5.131
09	-5.131	-4.606	1.381	-5.555
10	1.276	-1.246	-3.718	-2.264
11	1.344	-3.902	-2.284	-3.107
12	1.097	-2.83	-0.693	-0.805
13	-4.263	-3.718	1.367	-3.255
14	0.21	-0.963	0.814	-2.052
15	-1.151	-0.886	0.096	0.775
16	-1.113	-0.423	0.155	0.614
17	-1.26	1.253	-1.932	-2.67
18	0.167	-0.693	-0.633	0.58
19	-2.225	-3.255	1.339	-3.309
20	0.899	-0.365	-1.088	-0.669
21	-1.132	-2.17	1.101	-0.585
22	-1.298	-0.806	0.878	-0.133
23	-0.27	-0.3	0.394	0.013

Standard thresholds

P-value	Threshold
0.001	-3.10019
0.0005	-1.35404
0.0001	2.35066