ZN684.H14RSNP.1.M.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN684.H14RSNP.1.M.D
Gene (human)	ZNF684 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	D

Motif length	15
Consensus	hMhnhCCWCCCYYhn
GC content	62.47%
Information content (bits; total / per base)	11.243 / 0.75
Data sources	Methyl-HT-SELEX
Aligned words	6132
Previous names	ZN684.H12RSNP.1.M.D

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.901	0.913	0.863	0.871	0.915	0.929	5.014	5.114	168.094	186.444

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Methyl HT-SELEX, 1 experiments	median	0.667	0.64	0.581	0.579	0.539	0.546
Methyl HT-SELEX, 1 experiments	best	0.667	0.64	0.581	0.579	0.539	0.546

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.68
HGNC	HGNC:28418
MGI
EntrezGene (human)	GeneID:127396 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN684_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q5T5D7 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	1
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZN684.H14RSNP.1.M.D.pcm
PWM	ZN684.H14RSNP.1.M.D.pwm
PFM	ZN684.H14RSNP.1.M.D.pfm
Threshold to P-value map	ZN684.H14RSNP.1.M.D.thr
Motif in other formats
JASPAR format	ZN684.H14RSNP.1.M.D_jaspar_format.txt
MEME format	ZN684.H14RSNP.1.M.D_meme_format.meme
Transfac format	ZN684.H14RSNP.1.M.D_transfac_format.txt
Homer format	ZN684.H14RSNP.1.M.D_homer_format_0.001.txt ZN684.H14RSNP.1.M.D_homer_format_0.0005.txt ZN684.H14RSNP.1.M.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	2367.75	2113.75	750.75	899.75
02	934.5	3864.5	584.5	748.5
03	2066.0	3005.0	338.0	723.0
04	1053.0	1857.0	1940.0	1282.0
05	805.0	2470.0	187.0	2670.0
06	230.0	5354.0	244.0	304.0
07	243.0	5503.0	2.0	384.0
08	3168.0	0.0	218.0	2746.0
09	2.0	5656.0	41.0	433.0
10	187.0	5655.0	288.0	2.0
11	1.0	5859.0	0.0	272.0
12	439.0	4072.0	236.0	1385.0
13	1054.0	1347.0	203.0	3528.0
14	1054.75	1725.75	416.75	2934.75
15	1150.0	2214.0	1316.0	1452.0

PFM

	A	C	G	T
01	0.386	0.345	0.122	0.147
02	0.152	0.63	0.095	0.122
03	0.337	0.49	0.055	0.118
04	0.172	0.303	0.316	0.209
05	0.131	0.403	0.03	0.435
06	0.038	0.873	0.04	0.05
07	0.04	0.897	0.0	0.063
08	0.517	0.0	0.036	0.448
09	0.0	0.922	0.007	0.071
10	0.03	0.922	0.047	0.0
11	0.0	0.955	0.0	0.044
12	0.072	0.664	0.038	0.226
13	0.172	0.22	0.033	0.575
14	0.172	0.281	0.068	0.479
15	0.188	0.361	0.215	0.237

PWM

	A	C	G	T
01	0.434	0.321	-0.712	-0.532
02	-0.494	0.924	-0.962	-0.715
03	0.298	0.672	-1.507	-0.75
04	-0.375	0.191	0.235	-0.179
05	-0.643	0.476	-2.094	0.554
06	-1.889	1.25	-1.83	-1.612
07	-1.834	1.277	-5.906	-1.38
08	0.725	-6.557	-1.942	0.582
09	-5.906	1.304	-3.571	-1.261
10	-2.094	1.304	-1.666	-5.906
11	-6.179	1.34	-6.557	-1.723
12	-1.247	0.976	-1.863	-0.101
13	-0.374	-0.129	-2.013	0.833
14	-0.373	0.118	-1.299	0.649
15	-0.287	0.367	-0.152	-0.054

Standard thresholds

P-value	Threshold
0.001	4.41221
0.0005	5.36171
0.0001	7.26626