ZN683.H14INVIVO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN683.H14INVIVO.0.PSG.A
Gene (human)	ZNF683 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf683
Gene synonyms (mouse)	Gm13060, Zfp683
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	11
Consensus	dGdGAAAGTKd
GC content	43.8%
Information content (bits; total / per base)	13.739 / 1.249
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	8640
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.888	0.949	0.8	0.858	0.891	0.95	47.969	65.481

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.938	0.934	0.719	0.749	0.593	0.639
GFPIVT, 1 experiments	best	0.938	0.934	0.719	0.749	0.593	0.639

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	298.644	0.947	0.942	0.904
GFPIVT, 2 experiments	best	564.699	0.964	0.963	0.913

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	PRDM1-like {2.3.3.12} (TFClass)
TFClass ID	TFClass: 2.3.3.12.2
HGNC	HGNC:28495
MGI	MGI:3650254
EntrezGene (human)	GeneID:257101 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN683_HUMAN
UniProt ID (mouse)	ZN683_MOUSE
UniProt AC (human)	Q8IZ20 (TFClass)
UniProt AC (mouse)	I7HJS4 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZN683.H14INVIVO.0.PSG.A.pcm
PWM	ZN683.H14INVIVO.0.PSG.A.pwm
PFM	ZN683.H14INVIVO.0.PSG.A.pfm
Threshold to P-value map	ZN683.H14INVIVO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZN683.H14INVIVO.0.PSG.A_jaspar_format.txt
MEME format	ZN683.H14INVIVO.0.PSG.A_meme_format.meme
Transfac format	ZN683.H14INVIVO.0.PSG.A_transfac_format.txt
Homer format	ZN683.H14INVIVO.0.PSG.A_homer_format_0.001.txt ZN683.H14INVIVO.0.PSG.A_homer_format_0.0005.txt ZN683.H14INVIVO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	3091.25	577.25	3939.25	1032.25
02	439.0	234.0	7394.0	573.0
03	2377.0	539.0	1105.0	4619.0
04	25.0	59.0	8508.0	48.0
05	8602.0	8.0	16.0	14.0
06	8601.0	2.0	21.0	16.0
07	8579.0	18.0	36.0	7.0
08	2.0	15.0	8619.0	4.0
09	44.0	146.0	375.0	8075.0
10	720.25	517.25	5216.25	2186.25
11	2733.25	1254.25	3029.25	1623.25

PFM

	A	C	G	T
01	0.358	0.067	0.456	0.119
02	0.051	0.027	0.856	0.066
03	0.275	0.062	0.128	0.535
04	0.003	0.007	0.985	0.006
05	0.996	0.001	0.002	0.002
06	0.995	0.0	0.002	0.002
07	0.993	0.002	0.004	0.001
08	0.0	0.002	0.998	0.0
09	0.005	0.017	0.043	0.935
10	0.083	0.06	0.604	0.253
11	0.316	0.145	0.351	0.188

PWM

	A	C	G	T
01	0.358	-1.317	0.6	-0.737
02	-1.589	-2.214	1.23	-1.324
03	0.096	-1.385	-0.669	0.76
04	-4.373	-3.564	1.37	-3.762
05	1.381	-5.35	-4.774	-4.89
06	1.381	-6.228	-4.532	-4.774
07	1.378	-4.67	-4.034	-5.453
08	-6.228	-4.83	1.383	-5.844
09	-3.845	-2.68	-1.746	1.318
10	-1.096	-1.426	0.881	0.012
11	0.235	-0.543	0.338	-0.285

Standard thresholds

P-value	Threshold
0.001	2.545635
0.0005	3.944545
0.0001	6.872865