ZN683.H14INVITRO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN683.H14INVITRO.0.PSG.A
Gene (human)	ZNF683 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf683
Gene synonyms (mouse)	Gm13060, Zfp683
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	20
Consensus	ddRRddddRGTGAAAGTKdn
GC content	42.32%
Information content (bits; total / per base)	19.53 / 0.976
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	1770
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.858	0.924	0.785	0.863	0.876	0.918	35.509	49.886

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.927	0.925	0.711	0.74	0.592	0.635
GFPIVT, 1 experiments	best	0.927	0.925	0.711	0.74	0.592	0.635

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	315.671	0.953	0.941	0.91
GFPIVT, 2 experiments	best	575.658	0.97	0.962	0.924

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	PRDM1-like {2.3.3.12} (TFClass)
TFClass ID	TFClass: 2.3.3.12.2
HGNC	HGNC:28495
MGI	MGI:3650254
EntrezGene (human)	GeneID:257101 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN683_HUMAN
UniProt ID (mouse)	ZN683_MOUSE
UniProt AC (human)	Q8IZ20 (TFClass)
UniProt AC (mouse)	I7HJS4 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZN683.H14INVITRO.0.PSG.A.pcm
PWM	ZN683.H14INVITRO.0.PSG.A.pwm
PFM	ZN683.H14INVITRO.0.PSG.A.pfm
Threshold to P-value map	ZN683.H14INVITRO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZN683.H14INVITRO.0.PSG.A_jaspar_format.txt
MEME format	ZN683.H14INVITRO.0.PSG.A_meme_format.meme
Transfac format	ZN683.H14INVITRO.0.PSG.A_transfac_format.txt
Homer format	ZN683.H14INVITRO.0.PSG.A_homer_format_0.001.txt ZN683.H14INVITRO.0.PSG.A_homer_format_0.0005.txt ZN683.H14INVITRO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	477.25	160.25	764.25	368.25
02	657.25	131.25	560.25	421.25
03	869.0	84.0	685.0	132.0
04	1009.0	66.0	558.0	137.0
05	864.0	87.0	437.0	382.0
06	499.0	81.0	834.0	356.0
07	468.0	54.0	754.0	494.0
08	597.0	87.0	382.0	704.0
09	720.0	44.0	933.0	73.0
10	21.0	0.0	1740.0	9.0
11	221.0	13.0	38.0	1498.0
12	0.0	0.0	1770.0	0.0
13	1770.0	0.0	0.0	0.0
14	1770.0	0.0	0.0	0.0
15	1770.0	0.0	0.0	0.0
16	0.0	0.0	1770.0	0.0
17	0.0	1.0	1.0	1768.0
18	54.0	24.0	1337.0	355.0
19	691.25	206.25	613.25	259.25
20	349.75	323.75	440.75	655.75

PFM

	A	C	G	T
01	0.27	0.091	0.432	0.208
02	0.371	0.074	0.317	0.238
03	0.491	0.047	0.387	0.075
04	0.57	0.037	0.315	0.077
05	0.488	0.049	0.247	0.216
06	0.282	0.046	0.471	0.201
07	0.264	0.031	0.426	0.279
08	0.337	0.049	0.216	0.398
09	0.407	0.025	0.527	0.041
10	0.012	0.0	0.983	0.005
11	0.125	0.007	0.021	0.846
12	0.0	0.0	1.0	0.0
13	1.0	0.0	0.0	0.0
14	1.0	0.0	0.0	0.0
15	1.0	0.0	0.0	0.0
16	0.0	0.0	1.0	0.0
17	0.0	0.001	0.001	0.999
18	0.031	0.014	0.755	0.201
19	0.391	0.117	0.346	0.146
20	0.198	0.183	0.249	0.37

PWM

	A	C	G	T
01	0.075	-1.008	0.545	-0.183
02	0.394	-1.205	0.235	-0.049
03	0.673	-1.644	0.435	-1.2
04	0.822	-1.879	0.231	-1.163
05	0.667	-1.609	-0.012	-0.146
06	0.12	-1.679	0.632	-0.216
07	0.056	-2.074	0.531	0.11
08	0.298	-1.609	-0.146	0.463
09	0.485	-2.271	0.744	-1.781
10	-2.967	-5.471	1.366	-3.711
11	-0.69	-3.397	-2.411	1.216
12	-5.471	-5.471	1.383	-5.471
13	1.383	-5.471	-5.471	-5.471
14	1.383	-5.471	-5.471	-5.471
15	1.383	-5.471	-5.471	-5.471
16	-5.471	-5.471	1.383	-5.471
17	-5.471	-5.042	-5.042	1.382
18	-2.074	-2.844	1.103	-0.219
19	0.445	-0.759	0.325	-0.532
20	-0.234	-0.311	-0.004	0.392

Standard thresholds

P-value	Threshold
0.001	-2.07629
0.0005	-0.24344
0.0001	3.61901