ZN682.H14CORE.1.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN682.H14CORE.1.P.B
Gene (human)	ZNF682 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	11
Consensus	RRvbMAGCCCh
GC content	70.53%
Information content (bits; total / per base)	11.822 / 1.075
Data sources	ChIP-Seq
Aligned words	401
Previous names	ZN682.H12CORE.1.P.B

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (6)	0.925	0.928	0.859	0.862	0.893	0.894	3.546	3.557	540.626	590.602

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.109
HGNC	HGNC:28857
MGI
EntrezGene (human)	GeneID:91120 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN682_HUMAN
UniProt ID (mouse)
UniProt AC (human)	O95780 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZN682.H14CORE.1.P.B.pcm
PWM	ZN682.H14CORE.1.P.B.pwm
PFM	ZN682.H14CORE.1.P.B.pfm
Threshold to P-value map	ZN682.H14CORE.1.P.B.thr
Motif in other formats
JASPAR format	ZN682.H14CORE.1.P.B_jaspar_format.txt
MEME format	ZN682.H14CORE.1.P.B_meme_format.meme
Transfac format	ZN682.H14CORE.1.P.B_transfac_format.txt
Homer format	ZN682.H14CORE.1.P.B_homer_format_0.001.txt ZN682.H14CORE.1.P.B_homer_format_0.0005.txt ZN682.H14CORE.1.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	59.0	37.0	271.0	34.0
02	95.0	31.0	246.0	29.0
03	55.0	238.0	56.0	52.0
04	56.0	162.0	74.0	109.0
05	226.0	156.0	16.0	3.0
06	395.0	3.0	1.0	2.0
07	3.0	6.0	390.0	2.0
08	1.0	390.0	4.0	6.0
09	1.0	395.0	0.0	5.0
10	2.0	397.0	0.0	2.0
11	81.0	199.0	39.0	82.0

PFM

	A	C	G	T
01	0.147	0.092	0.676	0.085
02	0.237	0.077	0.613	0.072
03	0.137	0.594	0.14	0.13
04	0.14	0.404	0.185	0.272
05	0.564	0.389	0.04	0.007
06	0.985	0.007	0.002	0.005
07	0.007	0.015	0.973	0.005
08	0.002	0.973	0.01	0.015
09	0.002	0.985	0.0	0.012
10	0.005	0.99	0.0	0.005
11	0.202	0.496	0.097	0.204

PWM

	A	C	G	T
01	-0.52	-0.972	0.985	-1.053
02	-0.053	-1.141	0.889	-1.205
03	-0.588	0.856	-0.571	-0.643
04	-0.571	0.474	-0.298	0.082
05	0.805	0.437	-1.76	-3.119
06	1.36	-3.119	-3.707	-3.37
07	-3.119	-2.608	1.347	-3.37
08	-3.707	1.347	-2.918	-2.608
09	-3.707	1.36	-4.218	-2.751
10	-3.37	1.365	-4.218	-3.37
11	-0.21	0.678	-0.921	-0.198

Standard thresholds

P-value	Threshold
0.001	4.12038
0.0005	5.1816
0.0001	7.478395