ZN665.H14INVIVO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN665.H14INVIVO.0.PSG.A
Gene (human)	ZNF665 (GeneCards)
Gene synonyms (human)	ZFP160L
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	25
Consensus	GhWGAAMTRRAWAMhKYMYTMGASR
GC content	42.05%
Information content (bits; total / per base)	24.084 / 0.963
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	5248
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.824	0.95	0.797	0.934	0.819	0.941	97.312	135.347

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	0.94	0.928	0.829	0.823	0.708	0.72
GFPIVT, 2 experiments	best	0.98	0.971	0.922	0.906	0.798	0.796

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	179.95	0.733	0.722	0.644
GFPIVT, 2 experiments	best	256.638	0.778	0.732	0.683

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF665-like {2.3.3.76} (TFClass)
TFClass ID	TFClass: 2.3.3.76.1
HGNC	HGNC:25885
MGI
EntrezGene (human)	GeneID:79788 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN665_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9H7R5 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZN665.H14INVIVO.0.PSG.A.pcm
PWM	ZN665.H14INVIVO.0.PSG.A.pwm
PFM	ZN665.H14INVIVO.0.PSG.A.pfm
Threshold to P-value map	ZN665.H14INVIVO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZN665.H14INVIVO.0.PSG.A_jaspar_format.txt
MEME format	ZN665.H14INVIVO.0.PSG.A_meme_format.meme
Transfac format	ZN665.H14INVIVO.0.PSG.A_transfac_format.txt
Homer format	ZN665.H14INVIVO.0.PSG.A_homer_format_0.001.txt ZN665.H14INVIVO.0.PSG.A_homer_format_0.0005.txt ZN665.H14INVIVO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	358.25	203.25	4362.25	324.25
02	1514.75	2821.75	339.75	571.75
03	1751.0	236.0	208.0	3053.0
04	395.0	101.0	4698.0	54.0
05	4866.0	162.0	120.0	100.0
06	4151.0	136.0	779.0	182.0
07	1631.0	2941.0	454.0	222.0
08	224.0	40.0	357.0	4627.0
09	1046.0	240.0	3809.0	153.0
10	2889.0	64.0	2275.0	20.0
11	5033.0	14.0	179.0	22.0
12	2743.0	63.0	1191.0	1251.0
13	5072.0	13.0	157.0	6.0
14	1899.0	2656.0	519.0	174.0
15	1159.0	1249.0	379.0	2461.0
16	191.0	62.0	1168.0	3827.0
17	442.0	3310.0	49.0	1447.0
18	2091.0	2730.0	81.0	346.0
19	322.0	1589.0	76.0	3261.0
20	203.0	264.0	183.0	4598.0
21	3408.0	1406.0	259.0	175.0
22	75.0	21.0	5115.0	37.0
23	5099.0	123.0	6.0	20.0
24	554.75	1489.75	2927.75	275.75
25	1537.75	112.75	3435.75	161.75

PFM

	A	C	G	T
01	0.068	0.039	0.831	0.062
02	0.289	0.538	0.065	0.109
03	0.334	0.045	0.04	0.582
04	0.075	0.019	0.895	0.01
05	0.927	0.031	0.023	0.019
06	0.791	0.026	0.148	0.035
07	0.311	0.56	0.087	0.042
08	0.043	0.008	0.068	0.882
09	0.199	0.046	0.726	0.029
10	0.55	0.012	0.433	0.004
11	0.959	0.003	0.034	0.004
12	0.523	0.012	0.227	0.238
13	0.966	0.002	0.03	0.001
14	0.362	0.506	0.099	0.033
15	0.221	0.238	0.072	0.469
16	0.036	0.012	0.223	0.729
17	0.084	0.631	0.009	0.276
18	0.398	0.52	0.015	0.066
19	0.061	0.303	0.014	0.621
20	0.039	0.05	0.035	0.876
21	0.649	0.268	0.049	0.033
22	0.014	0.004	0.975	0.007
23	0.972	0.023	0.001	0.004
24	0.106	0.284	0.558	0.053
25	0.293	0.021	0.655	0.031

PWM

	A	C	G	T
01	-1.294	-1.856	1.2	-1.393
02	0.143	0.765	-1.346	-0.828
03	0.288	-1.708	-1.833	0.844
04	-1.197	-2.545	1.274	-3.153
05	1.31	-2.08	-2.376	-2.555
06	1.151	-2.253	-0.52	-1.965
07	0.217	0.806	-1.058	-1.769
08	-1.76	-3.44	-1.297	1.259
09	-0.226	-1.691	1.065	-2.137
10	0.788	-2.989	0.55	-4.083
11	1.343	-4.4	-1.982	-3.997
12	0.737	-3.004	-0.097	-0.048
13	1.351	-4.464	-2.111	-5.084
14	0.369	0.704	-0.925	-2.01
15	-0.124	-0.049	-1.238	0.628
16	-1.918	-3.02	-0.116	1.069
17	-1.085	0.924	-3.246	0.098
18	0.465	0.732	-2.76	-1.328
19	-1.4	0.191	-2.822	0.91
20	-1.857	-1.597	-1.96	1.253
21	0.954	0.069	-1.616	-2.004
22	-2.835	-4.039	1.359	-3.514
23	1.356	-2.351	-5.084	-4.083
24	-0.859	0.127	0.802	-1.554
25	0.159	-2.437	0.962	-2.082

Standard thresholds

P-value	Threshold
0.001	-1.78599
0.0005	-0.23569
0.0001	3.06056