ZN652.H14INVIVO.0.PS.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN652.H14INVIVO.0.PS.A
Gene (human)	ZNF652 (GeneCards)
Gene synonyms (human)	KIAA0924
Gene (mouse)	Znf652
Gene synonyms (mouse)	Kiaa0924, Zfp652
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	11
Consensus	bvRRGGGTTAA
GC content	36.77%
Information content (bits; total / per base)	13.869 / 1.261
Data sources	ChIP-Seq + HT-SELEX
Aligned words	1000
Previous names	ZN652.H12INVIVO.0.PS.A

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (7)	0.958	0.966	0.931	0.946	0.951	0.957	4.805	4.916	604.495	629.509

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 1 experiments	median	0.593	0.6	0.543	0.551	0.522	0.53
Non-Methyl HT-SELEX, 1 experiments	best	0.593	0.6	0.543	0.551	0.522	0.53

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF652-like {2.3.3.29} (TFClass)
TFClass ID	TFClass: 2.3.3.29.1
HGNC	HGNC:29147
MGI	MGI:2442221
EntrezGene (human)	GeneID:22834 (SSTAR profile)
EntrezGene (mouse)	GeneID:268469 (SSTAR profile)
UniProt ID (human)	ZN652_HUMAN
UniProt ID (mouse)	ZN652_MOUSE
UniProt AC (human)	Q9Y2D9 (TFClass)
UniProt AC (mouse)	Q5DU09 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZN652.H14INVIVO.0.PS.A.pcm
PWM	ZN652.H14INVIVO.0.PS.A.pwm
PFM	ZN652.H14INVIVO.0.PS.A.pfm
Threshold to P-value map	ZN652.H14INVIVO.0.PS.A.thr
Motif in other formats
JASPAR format	ZN652.H14INVIVO.0.PS.A_jaspar_format.txt
MEME format	ZN652.H14INVIVO.0.PS.A_meme_format.meme
Transfac format	ZN652.H14INVIVO.0.PS.A_transfac_format.txt
Homer format	ZN652.H14INVIVO.0.PS.A_homer_format_0.001.txt ZN652.H14INVIVO.0.PS.A_homer_format_0.0005.txt ZN652.H14INVIVO.0.PS.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	71.0	239.0	433.0	257.0
02	604.0	145.0	137.0	114.0
03	778.0	63.0	111.0	48.0
04	697.0	21.0	235.0	47.0
05	48.0	36.0	836.0	80.0
06	245.0	3.0	734.0	18.0
07	2.0	2.0	995.0	1.0
08	1.0	1.0	0.0	998.0
09	4.0	6.0	10.0	980.0
10	986.0	6.0	4.0	4.0
11	967.0	20.0	8.0	5.0

PFM

	A	C	G	T
01	0.071	0.239	0.433	0.257
02	0.604	0.145	0.137	0.114
03	0.778	0.063	0.111	0.048
04	0.697	0.021	0.235	0.047
05	0.048	0.036	0.836	0.08
06	0.245	0.003	0.734	0.018
07	0.002	0.002	0.995	0.001
08	0.001	0.001	0.0	0.998
09	0.004	0.006	0.01	0.98
10	0.986	0.006	0.004	0.004
11	0.967	0.02	0.008	0.005

PWM

	A	C	G	T
01	-1.242	-0.045	0.546	0.027
02	0.878	-0.54	-0.596	-0.777
03	1.131	-1.358	-0.803	-1.622
04	1.021	-2.405	-0.061	-1.642
05	-1.622	-1.898	1.202	-1.125
06	-0.02	-3.975	1.073	-2.546
07	-4.213	-4.213	1.376	-4.525
08	-4.525	-4.525	-4.982	1.379
09	-3.783	-3.484	-3.066	1.361
10	1.367	-3.484	-3.783	-3.783
11	1.348	-2.45	-3.253	-3.622

Standard thresholds

P-value	Threshold
0.001	3.128315
0.0005	4.35765
0.0001	6.91977