| Motif | ZN652.H14INVITRO.0.PS.A |
| Gene (human) | ZNF652 (GeneCards) |
| Gene synonyms (human) | KIAA0924 |
| Gene (mouse) | Znf652 |
| Gene synonyms (mouse) | Kiaa0924, Zfp652 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | ZN652.H14INVITRO.0.PS.A |
| Gene (human) | ZNF652 (GeneCards) |
| Gene synonyms (human) | KIAA0924 |
| Gene (mouse) | Znf652 |
| Gene synonyms (mouse) | Kiaa0924, Zfp652 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 10 |
| Consensus | RKGGTTAAhn |
| GC content | 40.12% |
| Information content (bits; total / per base) | 13.149 / 1.315 |
| Data sources | ChIP-Seq + HT-SELEX |
| Aligned words | 330 |
| Previous names | ZN652.H12INVITRO.0.PS.A |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 1 (7) | 0.941 | 0.947 | 0.897 | 0.913 | 0.9 | 0.909 | 3.566 | 3.613 | 506.921 | 528.569 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 1 experiments | median | 0.619 | 0.608 | 0.561 | 0.56 | 0.531 | 0.536 |
| best | 0.619 | 0.608 | 0.561 | 0.56 | 0.531 | 0.536 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | ZNF652-like {2.3.3.29} (TFClass) |
| TFClass ID | TFClass: 2.3.3.29.1 |
| HGNC | HGNC:29147 |
| MGI | MGI:2442221 |
| EntrezGene (human) | GeneID:22834 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:268469 (SSTAR profile) |
| UniProt ID (human) | ZN652_HUMAN |
| UniProt ID (mouse) | ZN652_MOUSE |
| UniProt AC (human) | Q9Y2D9 (TFClass) |
| UniProt AC (mouse) | Q5DU09 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 0 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 0 |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | ZN652.H14INVITRO.0.PS.A.pcm |
| PWM | ZN652.H14INVITRO.0.PS.A.pwm |
| PFM | ZN652.H14INVITRO.0.PS.A.pfm |
| Threshold to P-value map | ZN652.H14INVITRO.0.PS.A.thr |
| Motif in other formats | |
| JASPAR format | ZN652.H14INVITRO.0.PS.A_jaspar_format.txt |
| MEME format | ZN652.H14INVITRO.0.PS.A_meme_format.meme |
| Transfac format | ZN652.H14INVITRO.0.PS.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 170.0 | 26.0 | 109.0 | 25.0 |
| 02 | 22.25 | 23.25 | 256.25 | 28.25 |
| 03 | 7.0 | 3.0 | 307.0 | 13.0 |
| 04 | 0.0 | 0.0 | 330.0 | 0.0 |
| 05 | 0.0 | 0.0 | 0.0 | 330.0 |
| 06 | 0.0 | 0.0 | 0.0 | 330.0 |
| 07 | 330.0 | 0.0 | 0.0 | 0.0 |
| 08 | 329.0 | 1.0 | 0.0 | 0.0 |
| 09 | 58.25 | 125.25 | 19.25 | 127.25 |
| 10 | 74.0 | 50.0 | 74.0 | 132.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.515 | 0.079 | 0.33 | 0.076 |
| 02 | 0.067 | 0.07 | 0.777 | 0.086 |
| 03 | 0.021 | 0.009 | 0.93 | 0.039 |
| 04 | 0.0 | 0.0 | 1.0 | 0.0 |
| 05 | 0.0 | 0.0 | 0.0 | 1.0 |
| 06 | 0.0 | 0.0 | 0.0 | 1.0 |
| 07 | 1.0 | 0.0 | 0.0 | 0.0 |
| 08 | 0.997 | 0.003 | 0.0 | 0.0 |
| 09 | 0.177 | 0.38 | 0.058 | 0.386 |
| 10 | 0.224 | 0.152 | 0.224 | 0.4 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.714 | -1.118 | 0.274 | -1.155 |
| 02 | -1.265 | -1.223 | 1.122 | -1.039 |
| 03 | -2.296 | -2.937 | 1.301 | -1.76 |
| 04 | -4.059 | -4.059 | 1.373 | -4.059 |
| 05 | -4.059 | -4.059 | -4.059 | 1.373 |
| 06 | -4.059 | -4.059 | -4.059 | 1.373 |
| 07 | 1.373 | -4.059 | -4.059 | -4.059 |
| 08 | 1.37 | -3.534 | -4.059 | -4.059 |
| 09 | -0.341 | 0.412 | -1.4 | 0.427 |
| 10 | -0.107 | -0.49 | -0.107 | 0.464 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.43448 |
| 0.0005 | 4.68553 |
| 0.0001 | 7.38396 |