ZN623.H14INVITRO.0.PG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN623.H14INVITRO.0.PG.A
Gene (human)	ZNF623 (GeneCards)
Gene synonyms (human)	KIAA0628
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	21
Consensus	MMYRMMhMMRSACMYdYRCAC
GC content	56.17%
Information content (bits; total / per base)	18.211 / 0.867
Data sources	ChIP-Seq + Genomic HT-SELEX
Aligned words	59
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.854	0.861	0.834	0.84	0.821	0.947	277.799	462.854

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	118.699	0.851	0.839	0.793
GFPIVT, 1 experiments	best	122.229	0.918	0.859	0.814

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.161
HGNC	HGNC:29084
MGI
EntrezGene (human)	GeneID:9831 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN623_HUMAN
UniProt ID (mouse)
UniProt AC (human)	O75123 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZN623.H14INVITRO.0.PG.A.pcm
PWM	ZN623.H14INVITRO.0.PG.A.pwm
PFM	ZN623.H14INVITRO.0.PG.A.pfm
Threshold to P-value map	ZN623.H14INVITRO.0.PG.A.thr
Motif in other formats
JASPAR format	ZN623.H14INVITRO.0.PG.A_jaspar_format.txt
MEME format	ZN623.H14INVITRO.0.PG.A_meme_format.meme
Transfac format	ZN623.H14INVITRO.0.PG.A_transfac_format.txt
Homer format	ZN623.H14INVITRO.0.PG.A_homer_format_0.001.txt ZN623.H14INVITRO.0.PG.A_homer_format_0.0005.txt ZN623.H14INVITRO.0.PG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	7.0	44.0	5.0	3.0
02	29.0	24.0	4.0	2.0
03	9.0	23.0	1.0	26.0
04	24.0	9.0	25.0	1.0
05	14.0	42.0	2.0	1.0
06	21.0	31.0	2.0	5.0
07	19.0	22.0	1.0	17.0
08	12.0	35.0	10.0	2.0
09	30.0	26.0	2.0	1.0
10	23.0	1.0	31.0	4.0
11	0.0	33.0	25.0	1.0
12	53.0	0.0	6.0	0.0
13	2.0	56.0	1.0	0.0
14	33.0	24.0	2.0	0.0
15	5.0	18.0	1.0	35.0
16	16.0	2.0	20.0	21.0
17	1.0	14.0	3.0	41.0
18	23.0	2.0	34.0	0.0
19	1.0	56.0	0.0	2.0
20	55.0	4.0	0.0	0.0
21	4.0	55.0	0.0	0.0

PFM

	A	C	G	T
01	0.119	0.746	0.085	0.051
02	0.492	0.407	0.068	0.034
03	0.153	0.39	0.017	0.441
04	0.407	0.153	0.424	0.017
05	0.237	0.712	0.034	0.017
06	0.356	0.525	0.034	0.085
07	0.322	0.373	0.017	0.288
08	0.203	0.593	0.169	0.034
09	0.508	0.441	0.034	0.017
10	0.39	0.017	0.525	0.068
11	0.0	0.559	0.424	0.017
12	0.898	0.0	0.102	0.0
13	0.034	0.949	0.017	0.0
14	0.559	0.407	0.034	0.0
15	0.085	0.305	0.017	0.593
16	0.271	0.034	0.339	0.356
17	0.017	0.237	0.051	0.695
18	0.39	0.034	0.576	0.0
19	0.017	0.949	0.0	0.034
20	0.932	0.068	0.0	0.0
21	0.068	0.932	0.0	0.0

PWM

	A	C	G	T
01	-0.676	1.049	-0.963	-1.367
02	0.644	0.462	-1.145	-1.653
03	-0.454	0.421	-2.055	0.538
04	0.462	-0.454	0.501	-2.055
05	-0.049	1.004	-1.653	-2.055
06	0.334	0.708	-1.653	-0.963
07	0.239	0.378	-2.055	0.133
08	-0.192	0.826	-0.358	-1.653
09	0.677	0.538	-1.653	-2.055
10	0.421	-2.055	0.708	-1.145
11	-2.739	0.769	0.501	-2.055
12	1.231	-2.739	-0.809	-2.739
13	-1.653	1.285	-2.055	-2.739
14	0.769	0.462	-1.653	-2.739
15	-0.963	0.187	-2.055	0.826
16	0.076	-1.653	0.287	0.334
17	-2.055	-0.049	-1.367	0.98
18	0.421	-1.653	0.798	-2.739
19	-2.055	1.285	-2.739	-1.653
20	1.268	-1.145	-2.739	-2.739
21	-1.145	1.268	-2.739	-2.739

Standard thresholds

P-value	Threshold
0.001	3.05926
0.0005	4.15641
0.0001	6.47236