| Motif | ZN580.H14INVIVO.0.SM.D |
| Gene (human) | ZNF580 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Znf580 |
| Gene synonyms (mouse) | Zfp580 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | ZN580.H14INVIVO.0.SM.D |
| Gene (human) | ZNF580 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Znf580 |
| Gene synonyms (mouse) | Zfp580 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 10 |
| Consensus | nvCTACChYn |
| GC content | 55.06% |
| Information content (bits; total / per base) | 11.357 / 1.136 |
| Data sources | HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 8973 |
| Previous names | ZN580.H12INVIVO.0.SM.D |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.935 | 0.9 | 0.888 | 0.848 | 0.789 | 0.765 |
| best | 0.942 | 0.909 | 0.899 | 0.861 | 0.808 | 0.782 | |
| Methyl HT-SELEX, 1 experiments | median | 0.942 | 0.909 | 0.899 | 0.861 | 0.808 | 0.782 |
| best | 0.942 | 0.909 | 0.899 | 0.861 | 0.808 | 0.782 | |
| Non-Methyl HT-SELEX, 1 experiments | median | 0.929 | 0.89 | 0.876 | 0.835 | 0.769 | 0.749 |
| best | 0.929 | 0.89 | 0.876 | 0.835 | 0.769 | 0.749 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | Other with up to three adjacent zinc fingers {2.3.2} (TFClass) |
| TF subfamily | Other {2.3.2.4} (TFClass) |
| TFClass ID | TFClass: 2.3.2.4.3 |
| HGNC | HGNC:29473 |
| MGI | MGI:1916242 |
| EntrezGene (human) | GeneID:51157 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:68992 (SSTAR profile) |
| UniProt ID (human) | ZN580_HUMAN |
| UniProt ID (mouse) | ZN580_MOUSE |
| UniProt AC (human) | Q9UK33 (TFClass) |
| UniProt AC (mouse) | Q9DB38 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 1 |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | ZN580.H14INVIVO.0.SM.D.pcm |
| PWM | ZN580.H14INVIVO.0.SM.D.pwm |
| PFM | ZN580.H14INVIVO.0.SM.D.pfm |
| Threshold to P-value map | ZN580.H14INVIVO.0.SM.D.thr |
| Motif in other formats | |
| JASPAR format | ZN580.H14INVIVO.0.SM.D_jaspar_format.txt |
| MEME format | ZN580.H14INVIVO.0.SM.D_meme_format.meme |
| Transfac format | ZN580.H14INVIVO.0.SM.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2666.25 | 2663.25 | 1477.25 | 2166.25 |
| 02 | 2163.0 | 4512.0 | 1927.0 | 371.0 |
| 03 | 15.0 | 8941.0 | 0.0 | 17.0 |
| 04 | 0.0 | 0.0 | 0.0 | 8973.0 |
| 05 | 8973.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 8973.0 | 0.0 | 0.0 |
| 07 | 0.0 | 8973.0 | 0.0 | 0.0 |
| 08 | 1184.0 | 4734.0 | 681.0 | 2374.0 |
| 09 | 966.0 | 1779.0 | 252.0 | 5976.0 |
| 10 | 2044.75 | 2803.75 | 1685.75 | 2438.75 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.297 | 0.297 | 0.165 | 0.241 |
| 02 | 0.241 | 0.503 | 0.215 | 0.041 |
| 03 | 0.002 | 0.996 | 0.0 | 0.002 |
| 04 | 0.0 | 0.0 | 0.0 | 1.0 |
| 05 | 1.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 1.0 | 0.0 | 0.0 |
| 07 | 0.0 | 1.0 | 0.0 | 0.0 |
| 08 | 0.132 | 0.528 | 0.076 | 0.265 |
| 09 | 0.108 | 0.198 | 0.028 | 0.666 |
| 10 | 0.228 | 0.312 | 0.188 | 0.272 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.173 | 0.171 | -0.417 | -0.035 |
| 02 | -0.036 | 0.698 | -0.152 | -1.794 |
| 03 | -4.867 | 1.382 | -6.894 | -4.758 |
| 04 | -6.894 | -6.894 | -6.894 | 1.386 |
| 05 | 1.386 | -6.894 | -6.894 | -6.894 |
| 06 | -6.894 | 1.386 | -6.894 | -6.894 |
| 07 | -6.894 | 1.386 | -6.894 | -6.894 |
| 08 | -0.638 | 0.746 | -1.19 | 0.057 |
| 09 | -0.841 | -0.232 | -2.178 | 0.979 |
| 10 | -0.093 | 0.223 | -0.285 | 0.083 |
| P-value | Threshold |
|---|---|
| 0.001 | 2.5958 |
| 0.0005 | 5.698995 |
| 0.0001 | 7.839735 |