ZN578.H14RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN578.H14RSNP.0.P.D
Gene (human)	ZNF578 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	21
Consensus	CCTGAGGYGACATACATCCTC
GC content	54.23%
Information content (bits; total / per base)	36.408 / 1.734
Data sources	ChIP-Seq
Aligned words	232
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.843	0.948	0.827	0.947	0.825	0.959	180.448	224.62

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.135
HGNC	HGNC:26449
MGI
EntrezGene (human)	GeneID:147660 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN578_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q96N58 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZN578.H14RSNP.0.P.D.pcm
PWM	ZN578.H14RSNP.0.P.D.pwm
PFM	ZN578.H14RSNP.0.P.D.pfm
Threshold to P-value map	ZN578.H14RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN578.H14RSNP.0.P.D_jaspar_format.txt
MEME format	ZN578.H14RSNP.0.P.D_meme_format.meme
Transfac format	ZN578.H14RSNP.0.P.D_transfac_format.txt
Homer format	ZN578.H14RSNP.0.P.D_homer_format_0.001.txt ZN578.H14RSNP.0.P.D_homer_format_0.0005.txt ZN578.H14RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	1.0	230.0	0.0	1.0
02	0.0	228.0	2.0	2.0
03	0.0	0.0	2.0	230.0
04	2.0	0.0	230.0	0.0
05	229.0	2.0	1.0	0.0
06	15.0	0.0	217.0	0.0
07	0.0	2.0	230.0	0.0
08	1.0	137.0	0.0	94.0
09	34.0	3.0	189.0	6.0
10	222.0	3.0	5.0	2.0
11	2.0	206.0	1.0	23.0
12	213.0	8.0	10.0	1.0
13	1.0	1.0	0.0	230.0
14	222.0	0.0	6.0	4.0
15	0.0	226.0	3.0	3.0
16	227.0	1.0	2.0	2.0
17	0.0	4.0	3.0	225.0
18	1.0	230.0	0.0	1.0
19	0.0	229.0	0.0	3.0
20	0.0	1.0	1.0	230.0
21	0.0	227.0	2.0	3.0

PFM

	A	C	G	T
01	0.004	0.991	0.0	0.004
02	0.0	0.983	0.009	0.009
03	0.0	0.0	0.009	0.991
04	0.009	0.0	0.991	0.0
05	0.987	0.009	0.004	0.0
06	0.065	0.0	0.935	0.0
07	0.0	0.009	0.991	0.0
08	0.004	0.591	0.0	0.405
09	0.147	0.013	0.815	0.026
10	0.957	0.013	0.022	0.009
11	0.009	0.888	0.004	0.099
12	0.918	0.034	0.043	0.004
13	0.004	0.004	0.0	0.991
14	0.957	0.0	0.026	0.017
15	0.0	0.974	0.013	0.013
16	0.978	0.004	0.009	0.009
17	0.0	0.017	0.013	0.97
18	0.004	0.991	0.0	0.004
19	0.0	0.987	0.0	0.013
20	0.0	0.004	0.004	0.991
21	0.0	0.978	0.009	0.013

PWM

	A	C	G	T
01	-3.224	1.36	-3.775	-3.224
02	-3.775	1.352	-2.871	-2.871
03	-3.775	-3.775	-2.871	1.36
04	-2.871	-3.775	1.36	-3.775
05	1.356	-2.871	-3.224	-3.775
06	-1.289	-3.775	1.303	-3.775
07	-3.775	-2.871	1.36	-3.775
08	-3.224	0.846	-3.775	0.474
09	-0.518	-2.611	1.165	-2.087
10	1.325	-2.611	-2.233	-2.871
11	-2.871	1.251	-3.224	-0.891
12	1.284	-1.847	-1.653	-3.224
13	-3.224	-3.224	-3.775	1.36
14	1.325	-3.775	-2.087	-2.404
15	-3.775	1.343	-2.611	-2.611
16	1.347	-3.224	-2.871	-2.871
17	-3.775	-2.404	-2.611	1.338
18	-3.224	1.36	-3.775	-3.224
19	-3.775	1.356	-3.775	-2.611
20	-3.775	-3.224	-3.224	1.36
21	-3.775	1.347	-2.871	-2.611

Standard thresholds

P-value	Threshold
0.001	-10.35864
0.0005	-8.36339
0.0001	-4.08489