ZN568.H14RSNP.0.SG.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN568.H14RSNP.0.SG.D
Gene (human)	ZNF568 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf568
Gene synonyms (mouse)	chato, Zfp568
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	18
Consensus	vdhvAAGAACRGShvbhv
GC content	46.81%
Information content (bits; total / per base)	15.444 / 0.858
Data sources	HT-SELEX + Genomic HT-SELEX
Aligned words	9210
Previous names

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	1.0	1.0	0.999	0.999	0.938	0.943
GFPIVT, 2 experiments	best	1.0	1.0	1.0	1.0	0.953	0.953

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	525.212	0.942	0.958	0.934
GFPIVT, 2 experiments	best	837.523	0.973	0.982	0.968

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZFP2-like {2.3.3.62} (TFClass)
TFClass ID	TFClass: 2.3.3.62.3
HGNC	HGNC:25392
MGI	MGI:2142347
EntrezGene (human)	GeneID:374900 (SSTAR profile)
EntrezGene (mouse)	GeneID:243905 (SSTAR profile)
UniProt ID (human)	ZN568_HUMAN
UniProt ID (mouse)	ZN568_MOUSE
UniProt AC (human)	Q3ZCX4 (TFClass)
UniProt AC (mouse)	E9PYI1 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZN568.H14RSNP.0.SG.D.pcm
PWM	ZN568.H14RSNP.0.SG.D.pwm
PFM	ZN568.H14RSNP.0.SG.D.pfm
Threshold to P-value map	ZN568.H14RSNP.0.SG.D.thr
Motif in other formats
JASPAR format	ZN568.H14RSNP.0.SG.D_jaspar_format.txt
MEME format	ZN568.H14RSNP.0.SG.D_meme_format.meme
Transfac format	ZN568.H14RSNP.0.SG.D_transfac_format.txt
Homer format	ZN568.H14RSNP.0.SG.D_homer_format_0.001.txt ZN568.H14RSNP.0.SG.D_homer_format_0.0005.txt ZN568.H14RSNP.0.SG.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	2949.75	3504.75	1490.75	1264.75
02	4651.75	1350.75	1751.75	1455.75
03	2534.0	2001.0	972.0	3703.0
04	4191.0	3020.0	1291.0	708.0
05	7654.0	74.0	1354.0	128.0
06	8180.0	70.0	490.0	470.0
07	13.0	24.0	9152.0	21.0
08	9133.0	27.0	15.0	35.0
09	9137.0	4.0	39.0	30.0
10	13.0	9020.0	112.0	65.0
11	6394.0	49.0	2517.0	250.0
12	115.0	50.0	8864.0	181.0
13	273.0	6553.0	1364.0	1020.0
14	2307.0	3056.0	652.0	3195.0
15	2114.0	1145.0	5007.0	944.0
16	1352.0	1780.0	1484.0	4594.0
17	1712.5	1757.5	1449.5	4290.5
18	1787.75	4740.75	1369.75	1311.75

PFM

	A	C	G	T
01	0.32	0.381	0.162	0.137
02	0.505	0.147	0.19	0.158
03	0.275	0.217	0.106	0.402
04	0.455	0.328	0.14	0.077
05	0.831	0.008	0.147	0.014
06	0.888	0.008	0.053	0.051
07	0.001	0.003	0.994	0.002
08	0.992	0.003	0.002	0.004
09	0.992	0.0	0.004	0.003
10	0.001	0.979	0.012	0.007
11	0.694	0.005	0.273	0.027
12	0.012	0.005	0.962	0.02
13	0.03	0.712	0.148	0.111
14	0.25	0.332	0.071	0.347
15	0.23	0.124	0.544	0.102
16	0.147	0.193	0.161	0.499
17	0.186	0.191	0.157	0.466
18	0.194	0.515	0.149	0.142

PWM

	A	C	G	T
01	0.248	0.42	-0.434	-0.598
02	0.703	-0.533	-0.273	-0.458
03	0.096	-0.14	-0.861	0.475
04	0.598	0.271	-0.578	-1.177
05	1.201	-3.408	-0.53	-2.873
06	1.267	-3.462	-1.544	-1.585
07	-5.016	-4.474	1.379	-4.595
08	1.377	-4.366	-4.893	-4.124
09	1.378	-5.905	-4.022	-4.268
10	-5.016	1.365	-3.004	-3.534
11	1.021	-3.805	0.089	-2.212
12	-2.978	-3.786	1.347	-2.532
13	-2.125	1.045	-0.523	-0.813
14	0.002	0.283	-1.259	0.327
15	-0.085	-0.698	0.776	-0.89
16	-0.532	-0.257	-0.439	0.69
17	-0.296	-0.27	-0.462	0.622
18	-0.253	0.722	-0.519	-0.562

Standard thresholds

P-value	Threshold
0.001	2.14826
0.0005	3.50346
0.0001	6.29301