ZN480.H14RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN480.H14RSNP.0.P.D
Gene (human)	ZNF480 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	24
Consensus	dSCdRTChYhvnnvCnCvYTChnh
GC content	52.84%
Information content (bits; total / per base)	14.033 / 0.585
Data sources	ChIP-Seq
Aligned words	331
Previous names	ZN480.H12RSNP.0.P.D

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.958	0.965	0.949	0.955	0.961	0.967	7.25	7.293	556.952	605.886

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.134
HGNC	HGNC:23305
MGI
EntrezGene (human)	GeneID:147657 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN480_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8WV37 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZN480.H14RSNP.0.P.D.pcm
PWM	ZN480.H14RSNP.0.P.D.pwm
PFM	ZN480.H14RSNP.0.P.D.pfm
Threshold to P-value map	ZN480.H14RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN480.H14RSNP.0.P.D_jaspar_format.txt
MEME format	ZN480.H14RSNP.0.P.D_meme_format.meme
Transfac format	ZN480.H14RSNP.0.P.D_transfac_format.txt
Homer format	ZN480.H14RSNP.0.P.D_homer_format_0.001.txt ZN480.H14RSNP.0.P.D_homer_format_0.0005.txt ZN480.H14RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	71.0	33.0	148.0	79.0
02	9.0	261.0	38.0	23.0
03	29.0	271.0	9.0	22.0
04	147.0	48.0	54.0	82.0
05	178.0	9.0	111.0	33.0
06	2.0	22.0	21.0	286.0
07	2.0	306.0	9.0	14.0
08	86.0	113.0	40.0	92.0
09	10.0	204.0	30.0	87.0
10	76.0	110.0	39.0	106.0
11	99.0	88.0	105.0	39.0
12	80.0	80.0	101.0	70.0
13	98.0	100.0	45.0	88.0
14	131.0	82.0	66.0	52.0
15	20.0	284.0	2.0	25.0
16	136.0	48.0	11.0	136.0
17	8.0	288.0	2.0	33.0
18	178.0	58.0	50.0	45.0
19	39.0	76.0	19.0	197.0
20	13.0	18.0	8.0	292.0
21	1.0	314.0	4.0	12.0
22	59.0	175.0	16.0	81.0
23	36.0	120.0	36.0	139.0
24	64.0	83.0	43.0	141.0

PFM

	A	C	G	T
01	0.215	0.1	0.447	0.239
02	0.027	0.789	0.115	0.069
03	0.088	0.819	0.027	0.066
04	0.444	0.145	0.163	0.248
05	0.538	0.027	0.335	0.1
06	0.006	0.066	0.063	0.864
07	0.006	0.924	0.027	0.042
08	0.26	0.341	0.121	0.278
09	0.03	0.616	0.091	0.263
10	0.23	0.332	0.118	0.32
11	0.299	0.266	0.317	0.118
12	0.242	0.242	0.305	0.211
13	0.296	0.302	0.136	0.266
14	0.396	0.248	0.199	0.157
15	0.06	0.858	0.006	0.076
16	0.411	0.145	0.033	0.411
17	0.024	0.87	0.006	0.1
18	0.538	0.175	0.151	0.136
19	0.118	0.23	0.057	0.595
20	0.039	0.054	0.024	0.882
21	0.003	0.949	0.012	0.036
22	0.178	0.529	0.048	0.245
23	0.109	0.363	0.109	0.42
24	0.193	0.251	0.13	0.426

PWM

	A	C	G	T
01	-0.15	-0.894	0.574	-0.046
02	-2.087	1.137	-0.758	-1.237
03	-1.017	1.174	-2.087	-1.278
04	0.567	-0.532	-0.418	-0.009
05	0.757	-2.087	0.289	-0.894
06	-3.195	-1.278	-1.322	1.228
07	-3.195	1.295	-2.087	-1.696
08	0.038	0.307	-0.709	0.104
09	-1.995	0.892	-0.985	0.049
10	-0.084	0.28	-0.733	0.244
11	0.176	0.06	0.234	-0.733
12	-0.033	-0.033	0.196	-0.164
13	0.166	0.186	-0.595	0.06
14	0.453	-0.009	-0.222	-0.454
15	-1.367	1.221	-3.195	-1.158
16	0.49	-0.532	-1.911	0.49
17	-2.187	1.235	-3.195	-0.894
18	0.757	-0.348	-0.493	-0.595
19	-0.733	-0.084	-1.415	0.857
20	-1.762	-1.465	-2.187	1.249
21	-3.537	1.321	-2.737	-1.834
22	-0.331	0.74	-1.574	-0.021
23	-0.81	0.366	-0.81	0.512
24	-0.252	0.003	-0.639	0.526

Standard thresholds

P-value	Threshold
0.001	3.76311
0.0005	4.75256
0.0001	6.83891