ZN367.H14INVITRO.0.PSGI.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN367.H14INVITRO.0.PSGI.A
Gene (human)	ZNF367 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf367
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	12
Consensus	vKTTAAAKGbMh
GC content	32.64%
Information content (bits; total / per base)	14.026 / 1.169
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq
Aligned words	938
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.938	0.939	0.867	0.871	0.839	0.852	303.235	333.77

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
overall, 2 experiments	median	0.999	0.999	0.999	0.999	0.998	0.996
overall, 2 experiments	best	0.999	0.999	0.999	0.999	0.998	0.997
Lysate, 1 experiments	median	0.999	0.998	0.998	0.998	0.997	0.996
Lysate, 1 experiments	best	0.999	0.998	0.998	0.998	0.997	0.996
GFPIVT, 1 experiments	median	0.999	0.999	0.999	0.999	0.998	0.997
GFPIVT, 1 experiments	best	0.999	0.999	0.999	0.999	0.998	0.997

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
overall, 2 experiments	median	655.853	0.926	0.975	0.943
overall, 2 experiments	best	691.699	0.954	0.979	0.957
Lysate, 1 experiments	median	584.456	0.896	0.973	0.934
Lysate, 1 experiments	best	584.456	0.896	0.973	0.934
GFPIVT, 1 experiments	median	681.469	0.946	0.977	0.952
GFPIVT, 1 experiments	best	691.699	0.954	0.979	0.957

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 1 experiments	median	0.989	0.981	0.98	0.969	0.969	0.952
Overall, 1 experiments	best	0.989	0.981	0.98	0.969	0.969	0.952

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Other with up to three adjacent zinc fingers {2.3.2} (TFClass)
TF subfamily	Other {2.3.2.4} (TFClass)
TFClass ID	TFClass: 2.3.2.4.256
HGNC
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	ZN367_HUMAN
UniProt ID (mouse)	ZN367_MOUSE
UniProt AC (human)	Q7RTV3 (TFClass)
UniProt AC (mouse)	Q0VDT2 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	2 overall: 1 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	2 overall: 1 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	1
PBM	0

PCM	ZN367.H14INVITRO.0.PSGI.A.pcm
PWM	ZN367.H14INVITRO.0.PSGI.A.pwm
PFM	ZN367.H14INVITRO.0.PSGI.A.pfm
Threshold to P-value map	ZN367.H14INVITRO.0.PSGI.A.thr
Motif in other formats
JASPAR format	ZN367.H14INVITRO.0.PSGI.A_jaspar_format.txt
MEME format	ZN367.H14INVITRO.0.PSGI.A_meme_format.meme
Transfac format	ZN367.H14INVITRO.0.PSGI.A_transfac_format.txt
Homer format	ZN367.H14INVITRO.0.PSGI.A_homer_format_0.001.txt ZN367.H14INVITRO.0.PSGI.A_homer_format_0.0005.txt ZN367.H14INVITRO.0.PSGI.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	358.0	229.0	242.0	109.0
02	99.0	36.0	124.0	679.0
03	0.0	0.0	0.0	938.0
04	0.0	0.0	0.0	938.0
05	937.0	0.0	1.0	0.0
06	938.0	0.0	0.0	0.0
07	937.0	0.0	0.0	1.0
08	100.0	1.0	476.0	361.0
09	52.0	36.0	821.0	29.0
10	56.0	229.0	505.0	148.0
11	276.0	568.0	26.0	68.0
12	331.0	359.0	21.0	227.0

PFM

	A	C	G	T
01	0.382	0.244	0.258	0.116
02	0.106	0.038	0.132	0.724
03	0.0	0.0	0.0	1.0
04	0.0	0.0	0.0	1.0
05	0.999	0.0	0.001	0.0
06	1.0	0.0	0.0	0.0
07	0.999	0.0	0.0	0.001
08	0.107	0.001	0.507	0.385
09	0.055	0.038	0.875	0.031
10	0.06	0.244	0.538	0.158
11	0.294	0.606	0.028	0.072
12	0.353	0.383	0.022	0.242

PWM

	A	C	G	T
01	0.421	-0.024	0.031	-0.758
02	-0.852	-1.835	-0.631	1.058
03	-4.928	-4.928	-4.928	1.381
04	-4.928	-4.928	-4.928	1.381
05	1.38	-4.928	-4.467	-4.928
06	1.381	-4.928	-4.928	-4.928
07	1.38	-4.928	-4.928	-4.467
08	-0.843	-4.467	0.704	0.429
09	-1.481	-1.835	1.248	-2.04
10	-1.409	-0.024	0.763	-0.456
11	0.162	0.88	-2.143	-1.22
12	0.343	0.423	-2.342	-0.032

Standard thresholds

P-value	Threshold
0.001	2.48251
0.0005	3.894565
0.0001	6.958085