ZN341.H14INVIVO.1.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN341.H14INVIVO.1.P.B
Gene (human)	ZNF341 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	23
Consensus	RRvvRvvvvSndvndGGAASAGC
GC content	64.23%
Information content (bits; total / per base)	13.883 / 0.604
Data sources	ChIP-Seq
Aligned words	1002
Previous names	ZN341.H12INVIVO.1.P.B

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	6 (38)	0.798	0.838	0.676	0.727	0.862	0.879	3.378	3.68	124.965	225.796

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	2.593	3.699	0.113	0.036

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.35
HGNC	HGNC:15992
MGI
EntrezGene (human)	GeneID:84905 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN341_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9BYN7 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	6 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZN341.H14INVIVO.1.P.B.pcm
PWM	ZN341.H14INVIVO.1.P.B.pwm
PFM	ZN341.H14INVIVO.1.P.B.pfm
Threshold to P-value map	ZN341.H14INVIVO.1.P.B.thr
Motif in other formats
JASPAR format	ZN341.H14INVIVO.1.P.B_jaspar_format.txt
MEME format	ZN341.H14INVIVO.1.P.B_meme_format.meme
Transfac format	ZN341.H14INVIVO.1.P.B_transfac_format.txt
Homer format	ZN341.H14INVIVO.1.P.B_homer_format_0.001.txt ZN341.H14INVIVO.1.P.B_homer_format_0.0005.txt ZN341.H14INVIVO.1.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	168.0	116.0	635.0	83.0
02	200.0	101.0	618.0	83.0
03	237.0	126.0	552.0	87.0
04	285.0	138.0	471.0	108.0
05	150.0	114.0	665.0	73.0
06	173.0	187.0	549.0	93.0
07	238.0	261.0	432.0	71.0
08	285.0	278.0	349.0	90.0
09	272.0	133.0	505.0	92.0
10	128.0	184.0	606.0	84.0
11	287.0	175.0	263.0	277.0
12	239.0	89.0	487.0	187.0
13	209.0	220.0	515.0	58.0
14	304.0	311.0	247.0	140.0
15	218.0	145.0	395.0	244.0
16	180.0	5.0	785.0	32.0
17	56.0	42.0	868.0	36.0
18	832.0	72.0	96.0	2.0
19	894.0	6.0	91.0	11.0
20	26.0	500.0	442.0	34.0
21	825.0	20.0	104.0	53.0
22	12.0	10.0	969.0	11.0
23	49.0	876.0	50.0	27.0

PFM

	A	C	G	T
01	0.168	0.116	0.634	0.083
02	0.2	0.101	0.617	0.083
03	0.237	0.126	0.551	0.087
04	0.284	0.138	0.47	0.108
05	0.15	0.114	0.664	0.073
06	0.173	0.187	0.548	0.093
07	0.238	0.26	0.431	0.071
08	0.284	0.277	0.348	0.09
09	0.271	0.133	0.504	0.092
10	0.128	0.184	0.605	0.084
11	0.286	0.175	0.262	0.276
12	0.239	0.089	0.486	0.187
13	0.209	0.22	0.514	0.058
14	0.303	0.31	0.247	0.14
15	0.218	0.145	0.394	0.244
16	0.18	0.005	0.783	0.032
17	0.056	0.042	0.866	0.036
18	0.83	0.072	0.096	0.002
19	0.892	0.006	0.091	0.011
20	0.026	0.499	0.441	0.034
21	0.823	0.02	0.104	0.053
22	0.012	0.01	0.967	0.011
23	0.049	0.874	0.05	0.027

PWM

	A	C	G	T
01	-0.396	-0.762	0.926	-1.091
02	-0.223	-0.898	0.899	-1.091
03	-0.055	-0.68	0.786	-1.045
04	0.128	-0.591	0.628	-0.832
05	-0.508	-0.779	0.972	-1.216
06	-0.367	-0.29	0.781	-0.979
07	-0.051	0.041	0.542	-1.244
08	0.128	0.103	0.33	-1.012
09	0.082	-0.627	0.698	-0.99
10	-0.665	-0.306	0.879	-1.079
11	0.135	-0.356	0.048	0.1
12	-0.047	-1.022	0.661	-0.29
13	-0.18	-0.129	0.717	-1.441
14	0.192	0.215	-0.014	-0.576
15	-0.138	-0.542	0.453	-0.026
16	-0.328	-3.624	1.138	-2.012
17	-1.475	-1.752	1.238	-1.9
18	1.196	-1.23	-0.948	-4.215
19	1.267	-3.486	-1.001	-2.987
20	-2.208	0.688	0.565	-1.954
21	1.187	-2.452	-0.869	-1.528
22	-2.911	-3.068	1.348	-2.987
23	-1.604	1.247	-1.584	-2.172

Standard thresholds

P-value	Threshold
0.001	3.72231
0.0005	4.72011
0.0001	6.81811