ZN234.H14RSNP.0.PSG.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN234.H14RSNP.0.PSG.D
Gene (human)	ZNF234 (GeneCards)
Gene synonyms (human)	ZNF269
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	17
Consensus	hSATAAAKdGGMGAhCd
GC content	40.71%
Information content (bits; total / per base)	17.836 / 1.049
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	6998
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	3 (3)	0.73	0.733	0.659	0.704	0.73	0.771	11.854	36.77

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.805	0.82	0.625	0.662	0.549	0.588
GFPIVT, 1 experiments	best	0.805	0.82	0.625	0.662	0.549	0.588

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	38.051	0.534	0.417	0.437
GFPIVT, 1 experiments	best	117.921	0.541	0.505	0.538

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF222-like {2.3.3.47} (TFClass)
TFClass ID	TFClass: 2.3.3.47.14
HGNC	HGNC:13027
MGI
EntrezGene (human)	GeneID:10780 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN234_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q14588 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZN234.H14RSNP.0.PSG.D.pcm
PWM	ZN234.H14RSNP.0.PSG.D.pwm
PFM	ZN234.H14RSNP.0.PSG.D.pfm
Threshold to P-value map	ZN234.H14RSNP.0.PSG.D.thr
Motif in other formats
JASPAR format	ZN234.H14RSNP.0.PSG.D_jaspar_format.txt
MEME format	ZN234.H14RSNP.0.PSG.D_meme_format.meme
Transfac format	ZN234.H14RSNP.0.PSG.D_transfac_format.txt
Homer format	ZN234.H14RSNP.0.PSG.D_homer_format_0.001.txt ZN234.H14RSNP.0.PSG.D_homer_format_0.0005.txt ZN234.H14RSNP.0.PSG.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	3351.75	1586.75	501.75	1557.75
02	333.75	686.75	5498.75	478.75
03	6246.0	437.0	199.0	116.0
04	210.0	328.0	109.0	6351.0
05	6532.0	161.0	115.0	190.0
06	6048.0	310.0	551.0	89.0
07	6017.0	78.0	607.0	296.0
08	199.0	647.0	1053.0	5099.0
09	3432.0	609.0	2099.0	858.0
10	191.0	31.0	6761.0	15.0
11	37.0	8.0	6908.0	45.0
12	3987.0	1662.0	108.0	1241.0
13	1854.0	9.0	5115.0	20.0
14	6872.0	47.0	48.0	31.0
15	1214.0	1610.0	486.0	3688.0
16	847.0	5696.0	206.0	249.0
17	1194.0	665.0	3499.0	1640.0

PFM

	A	C	G	T
01	0.479	0.227	0.072	0.223
02	0.048	0.098	0.786	0.068
03	0.893	0.062	0.028	0.017
04	0.03	0.047	0.016	0.908
05	0.933	0.023	0.016	0.027
06	0.864	0.044	0.079	0.013
07	0.86	0.011	0.087	0.042
08	0.028	0.092	0.15	0.729
09	0.49	0.087	0.3	0.123
10	0.027	0.004	0.966	0.002
11	0.005	0.001	0.987	0.006
12	0.57	0.237	0.015	0.177
13	0.265	0.001	0.731	0.003
14	0.982	0.007	0.007	0.004
15	0.173	0.23	0.069	0.527
16	0.121	0.814	0.029	0.036
17	0.171	0.095	0.5	0.234

PWM

	A	C	G	T
01	0.65	-0.098	-1.246	-0.116
02	-1.651	-0.933	1.144	-1.293
03	1.272	-1.383	-2.164	-2.696
04	-2.111	-1.669	-2.757	1.288
05	1.316	-2.373	-2.704	-2.21
06	1.239	-1.725	-1.153	-2.955
07	1.234	-3.084	-1.056	-1.771
08	-2.164	-0.993	-0.507	1.069
09	0.673	-1.053	0.182	-0.711
10	-2.205	-3.965	1.351	-4.623
11	-3.799	-5.145	1.372	-3.614
12	0.823	-0.051	-2.766	-0.343
13	0.058	-5.051	1.072	-4.368
14	1.367	-3.572	-3.552	-3.965
15	-0.365	-0.083	-1.278	0.745
16	-0.724	1.18	-2.13	-1.942
17	-0.381	-0.965	0.693	-0.065

Standard thresholds

P-value	Threshold
0.001	1.52881
0.0005	2.84511
0.0001	5.61261