ZN234.H14INVITRO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN234.H14INVITRO.0.PSG.A
Gene (human)	ZNF234 (GeneCards)
Gene synonyms (human)	ZNF269
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	16
Consensus	SRKRRRKdGGhRAbSd
GC content	50.19%
Information content (bits; total / per base)	10.788 / 0.674
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	6263
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	3 (3)	0.688	0.713	0.617	0.644	0.72	0.747	6.585	15.699

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.79	0.794	0.648	0.663	0.576	0.596
GFPIVT, 1 experiments	best	0.79	0.794	0.648	0.663	0.576	0.596

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	17.62	0.56	0.388	0.404
GFPIVT, 1 experiments	best	64.208	0.63	0.567	0.557

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF222-like {2.3.3.47} (TFClass)
TFClass ID	TFClass: 2.3.3.47.14
HGNC	HGNC:13027
MGI
EntrezGene (human)	GeneID:10780 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN234_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q14588 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZN234.H14INVITRO.0.PSG.A.pcm
PWM	ZN234.H14INVITRO.0.PSG.A.pwm
PFM	ZN234.H14INVITRO.0.PSG.A.pfm
Threshold to P-value map	ZN234.H14INVITRO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZN234.H14INVITRO.0.PSG.A_jaspar_format.txt
MEME format	ZN234.H14INVITRO.0.PSG.A_meme_format.meme
Transfac format	ZN234.H14INVITRO.0.PSG.A_transfac_format.txt
Homer format	ZN234.H14INVITRO.0.PSG.A_homer_format_0.001.txt ZN234.H14INVITRO.0.PSG.A_homer_format_0.0005.txt ZN234.H14INVITRO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	467.75	839.75	4418.75	536.75
02	3981.5	591.5	1147.5	542.5
03	655.0	493.0	820.0	4295.0
04	4070.0	502.0	1289.0	402.0
05	3485.0	566.0	1864.0	348.0
06	3691.0	370.0	1552.0	650.0
07	688.0	516.0	1368.0	3691.0
08	2819.0	403.0	2317.0	724.0
09	98.0	174.0	5928.0	63.0
10	26.0	5.0	6193.0	39.0
11	2929.0	1374.0	330.0	1630.0
12	1329.0	93.0	4600.0	241.0
13	4902.0	80.0	1153.0	128.0
14	1001.0	1205.0	1033.0	3024.0
15	694.5	3578.5	1561.5	428.5
16	858.75	595.75	3332.75	1475.75

PFM

	A	C	G	T
01	0.075	0.134	0.706	0.086
02	0.636	0.094	0.183	0.087
03	0.105	0.079	0.131	0.686
04	0.65	0.08	0.206	0.064
05	0.556	0.09	0.298	0.056
06	0.589	0.059	0.248	0.104
07	0.11	0.082	0.218	0.589
08	0.45	0.064	0.37	0.116
09	0.016	0.028	0.947	0.01
10	0.004	0.001	0.989	0.006
11	0.468	0.219	0.053	0.26
12	0.212	0.015	0.734	0.038
13	0.783	0.013	0.184	0.02
14	0.16	0.192	0.165	0.483
15	0.111	0.571	0.249	0.068
16	0.137	0.095	0.532	0.236

PWM

	A	C	G	T
01	-1.205	-0.622	1.037	-1.068
02	0.932	-0.971	-0.31	-1.057
03	-0.87	-1.153	-0.646	1.008
04	0.954	-1.135	-0.194	-1.356
05	0.799	-1.015	0.174	-1.499
06	0.857	-1.438	-0.009	-0.877
07	-0.821	-1.107	-0.135	0.857
08	0.587	-1.353	0.391	-0.77
09	-2.75	-2.186	1.33	-3.18
10	-4.019	-5.385	1.374	-3.639
11	0.626	-0.13	-1.552	0.04
12	-0.164	-2.802	1.077	-1.864
13	1.14	-2.949	-0.305	-2.489
14	-0.447	-0.261	-0.415	0.658
15	-0.811	0.826	-0.003	-1.292
16	-0.599	-0.964	0.755	-0.059

Standard thresholds

P-value	Threshold
0.001	4.55376
0.0005	5.41381
0.0001	7.17551