ZN184.H14CORE.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN184.H14CORE.0.P.B
Gene (human)	ZNF184 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Zfp184
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	31
Consensus	CCTCWCCARCACYTGKTRTTdYYWRWCTTTT
GC content	43.3%
Information content (bits; total / per base)	38.657 / 1.247
Data sources	ChIP-Seq
Aligned words	724
Previous names	ZN184.H12CORE.0.P.B

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	3 (18)	0.777	0.91	0.779	0.911	0.816	0.923	12.131	18.307	373.931	638.046

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.220
HGNC	HGNC:12975
MGI	MGI:1922244
EntrezGene (human)	GeneID:7738 (SSTAR profile)
EntrezGene (mouse)	GeneID:193452 (SSTAR profile)
UniProt ID (human)	ZN184_HUMAN
UniProt ID (mouse)	ZN184_MOUSE
UniProt AC (human)	Q99676 (TFClass)
UniProt AC (mouse)	Q7TSH9 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZN184.H14CORE.0.P.B.pcm
PWM	ZN184.H14CORE.0.P.B.pwm
PFM	ZN184.H14CORE.0.P.B.pfm
Threshold to P-value map	ZN184.H14CORE.0.P.B.thr
Motif in other formats
JASPAR format	ZN184.H14CORE.0.P.B_jaspar_format.txt
MEME format	ZN184.H14CORE.0.P.B_meme_format.meme
Transfac format	ZN184.H14CORE.0.P.B_transfac_format.txt
Homer format	ZN184.H14CORE.0.P.B_homer_format_0.001.txt ZN184.H14CORE.0.P.B_homer_format_0.0005.txt ZN184.H14CORE.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	7.0	648.0	4.0	65.0
02	19.0	564.0	14.0	127.0
03	2.0	8.0	2.0	712.0
04	3.0	636.0	5.0	80.0
05	244.0	23.0	92.0	365.0
06	6.0	686.0	3.0	29.0
07	0.0	717.0	1.0	6.0
08	706.0	7.0	3.0	8.0
09	284.0	7.0	416.0	17.0
10	9.0	653.0	10.0	52.0
11	692.0	18.0	5.0	9.0
12	3.0	680.0	1.0	40.0
13	3.0	323.0	1.0	397.0
14	6.0	9.0	35.0	674.0
15	96.0	14.0	602.0	12.0
16	56.0	19.0	183.0	466.0
17	2.0	16.0	19.0	687.0
18	300.0	11.0	397.0	16.0
19	20.0	27.0	28.0	649.0
20	27.0	15.0	87.0	595.0
21	160.0	9.0	219.0	336.0
22	3.0	368.0	11.0	342.0
23	5.0	497.0	35.0	187.0
24	195.0	87.0	27.0	415.0
25	84.0	24.0	568.0	48.0
26	379.0	48.0	15.0	282.0
27	10.0	658.0	10.0	46.0
28	5.0	21.0	0.0	698.0
29	4.0	20.0	5.0	695.0
30	5.0	9.0	0.0	710.0
31	2.0	96.0	2.0	624.0

PFM

	A	C	G	T
01	0.01	0.895	0.006	0.09
02	0.026	0.779	0.019	0.175
03	0.003	0.011	0.003	0.983
04	0.004	0.878	0.007	0.11
05	0.337	0.032	0.127	0.504
06	0.008	0.948	0.004	0.04
07	0.0	0.99	0.001	0.008
08	0.975	0.01	0.004	0.011
09	0.392	0.01	0.575	0.023
10	0.012	0.902	0.014	0.072
11	0.956	0.025	0.007	0.012
12	0.004	0.939	0.001	0.055
13	0.004	0.446	0.001	0.548
14	0.008	0.012	0.048	0.931
15	0.133	0.019	0.831	0.017
16	0.077	0.026	0.253	0.644
17	0.003	0.022	0.026	0.949
18	0.414	0.015	0.548	0.022
19	0.028	0.037	0.039	0.896
20	0.037	0.021	0.12	0.822
21	0.221	0.012	0.302	0.464
22	0.004	0.508	0.015	0.472
23	0.007	0.686	0.048	0.258
24	0.269	0.12	0.037	0.573
25	0.116	0.033	0.785	0.066
26	0.523	0.066	0.021	0.39
27	0.014	0.909	0.014	0.064
28	0.007	0.029	0.0	0.964
29	0.006	0.028	0.007	0.96
30	0.007	0.012	0.0	0.981
31	0.003	0.133	0.003	0.862

PWM

	A	C	G	T
01	-3.05	1.269	-3.477	-1.008
02	-2.18	1.13	-2.457	-0.35
03	-3.914	-2.941	-3.914	1.363
04	-3.672	1.25	-3.314	-0.805
05	0.296	-2.003	-0.668	0.697
06	-3.173	1.326	-3.672	-1.785
07	-4.709	1.37	-4.234	-3.173
08	1.354	-3.05	-3.672	-2.941
09	0.447	-3.05	0.827	-2.282
10	-2.842	1.277	-2.753	-1.225
11	1.334	-2.23	-3.314	-2.842
12	-3.672	1.317	-4.234	-1.478
13	-3.672	0.575	-4.234	0.781
14	-3.173	-2.842	-1.606	1.308
15	-0.626	-2.457	1.195	-2.594
16	-1.153	-2.18	0.011	0.94
17	-3.914	-2.337	-2.18	1.327
18	0.502	-2.67	0.781	-2.337
19	-2.133	-1.853	-1.818	1.27
20	-1.853	-2.395	-0.723	1.184
21	-0.122	-2.842	0.189	0.614
22	-3.672	0.705	-2.67	0.632
23	-3.314	1.004	-1.606	0.032
24	0.074	-0.723	-1.853	0.825
25	-0.757	-1.963	1.137	-1.303
26	0.734	-1.303	-2.395	0.44
27	-2.753	1.284	-2.753	-1.344
28	-3.314	-2.088	-4.709	1.343
29	-3.477	-2.133	-3.314	1.339
30	-3.314	-2.842	-4.709	1.36
31	-3.914	-0.626	-3.914	1.231

Standard thresholds

P-value	Threshold
0.001	-11.93034
0.0005	-9.88269
0.0001	-5.48129