| Motif | ZN140.H14RSNP.0.P.D |
| Gene (human) | ZNF140 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | ZN140.H14RSNP.0.P.D |
| Gene (human) | ZNF140 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 23 |
| Consensus | hhbhWRCAATTCYRCTCMhhvvb |
| GC content | 51.15% |
| Information content (bits; total / per base) | 18.765 / 0.816 |
| Data sources | ChIP-Seq |
| Aligned words | 1013 |
| Previous names | ZN140.H12RSNP.0.P.D |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 2 (11) | 0.823 | 0.906 | 0.766 | 0.887 | 0.852 | 0.926 | 6.846 | 10.49 | 179.174 | 393.553 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.642 | 0.671 | 0.55 | 0.58 | 0.519 | 0.542 |
| best | 0.667 | 0.702 | 0.555 | 0.593 | 0.521 | 0.548 | |
| Methyl HT-SELEX, 1 experiments | median | 0.667 | 0.702 | 0.555 | 0.593 | 0.517 | 0.548 |
| best | 0.667 | 0.702 | 0.555 | 0.593 | 0.517 | 0.548 | |
| Non-Methyl HT-SELEX, 1 experiments | median | 0.617 | 0.639 | 0.545 | 0.566 | 0.521 | 0.536 |
| best | 0.617 | 0.639 | 0.545 | 0.566 | 0.521 | 0.536 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | ZNF302-like {2.3.3.44} (TFClass) |
| TFClass ID | TFClass: 2.3.3.44.4 |
| HGNC | HGNC:12925 |
| MGI | |
| EntrezGene (human) | GeneID:7699 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | ZN140_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | P52738 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | yes |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 1 |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | ZN140.H14RSNP.0.P.D.pcm |
| PWM | ZN140.H14RSNP.0.P.D.pwm |
| PFM | ZN140.H14RSNP.0.P.D.pfm |
| Threshold to P-value map | ZN140.H14RSNP.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | ZN140.H14RSNP.0.P.D_jaspar_format.txt |
| MEME format | ZN140.H14RSNP.0.P.D_meme_format.meme |
| Transfac format | ZN140.H14RSNP.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 522.0 | 182.0 | 151.0 | 158.0 |
| 02 | 118.0 | 529.0 | 107.0 | 259.0 |
| 03 | 107.0 | 589.0 | 123.0 | 194.0 |
| 04 | 123.0 | 604.0 | 97.0 | 189.0 |
| 05 | 658.0 | 68.0 | 74.0 | 213.0 |
| 06 | 117.0 | 43.0 | 777.0 | 76.0 |
| 07 | 14.0 | 952.0 | 14.0 | 33.0 |
| 08 | 827.0 | 85.0 | 35.0 | 66.0 |
| 09 | 877.0 | 55.0 | 59.0 | 22.0 |
| 10 | 9.0 | 60.0 | 11.0 | 933.0 |
| 11 | 8.0 | 17.0 | 9.0 | 979.0 |
| 12 | 37.0 | 942.0 | 25.0 | 9.0 |
| 13 | 84.0 | 698.0 | 3.0 | 228.0 |
| 14 | 451.0 | 34.0 | 517.0 | 11.0 |
| 15 | 20.0 | 875.0 | 55.0 | 63.0 |
| 16 | 11.0 | 118.0 | 12.0 | 872.0 |
| 17 | 8.0 | 943.0 | 5.0 | 57.0 |
| 18 | 171.0 | 688.0 | 28.0 | 126.0 |
| 19 | 178.0 | 199.0 | 85.0 | 551.0 |
| 20 | 458.0 | 171.0 | 170.0 | 214.0 |
| 21 | 161.0 | 214.0 | 491.0 | 147.0 |
| 22 | 209.0 | 222.0 | 410.0 | 172.0 |
| 23 | 131.0 | 229.0 | 142.0 | 511.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.515 | 0.18 | 0.149 | 0.156 |
| 02 | 0.116 | 0.522 | 0.106 | 0.256 |
| 03 | 0.106 | 0.581 | 0.121 | 0.192 |
| 04 | 0.121 | 0.596 | 0.096 | 0.187 |
| 05 | 0.65 | 0.067 | 0.073 | 0.21 |
| 06 | 0.115 | 0.042 | 0.767 | 0.075 |
| 07 | 0.014 | 0.94 | 0.014 | 0.033 |
| 08 | 0.816 | 0.084 | 0.035 | 0.065 |
| 09 | 0.866 | 0.054 | 0.058 | 0.022 |
| 10 | 0.009 | 0.059 | 0.011 | 0.921 |
| 11 | 0.008 | 0.017 | 0.009 | 0.966 |
| 12 | 0.037 | 0.93 | 0.025 | 0.009 |
| 13 | 0.083 | 0.689 | 0.003 | 0.225 |
| 14 | 0.445 | 0.034 | 0.51 | 0.011 |
| 15 | 0.02 | 0.864 | 0.054 | 0.062 |
| 16 | 0.011 | 0.116 | 0.012 | 0.861 |
| 17 | 0.008 | 0.931 | 0.005 | 0.056 |
| 18 | 0.169 | 0.679 | 0.028 | 0.124 |
| 19 | 0.176 | 0.196 | 0.084 | 0.544 |
| 20 | 0.452 | 0.169 | 0.168 | 0.211 |
| 21 | 0.159 | 0.211 | 0.485 | 0.145 |
| 22 | 0.206 | 0.219 | 0.405 | 0.17 |
| 23 | 0.129 | 0.226 | 0.14 | 0.504 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.72 | -0.328 | -0.513 | -0.468 |
| 02 | -0.756 | 0.733 | -0.852 | 0.022 |
| 03 | -0.852 | 0.84 | -0.715 | -0.264 |
| 04 | -0.715 | 0.865 | -0.949 | -0.29 |
| 05 | 0.951 | -1.297 | -1.214 | -0.172 |
| 06 | -0.764 | -1.741 | 1.116 | -1.188 |
| 07 | -2.786 | 1.319 | -2.786 | -1.994 |
| 08 | 1.179 | -1.078 | -1.938 | -1.326 |
| 09 | 1.237 | -1.503 | -1.435 | -2.374 |
| 10 | -3.168 | -1.418 | -2.997 | 1.299 |
| 11 | -3.266 | -2.611 | -3.168 | 1.347 |
| 12 | -1.885 | 1.309 | -2.255 | -3.168 |
| 13 | -1.09 | 1.01 | -3.987 | -0.104 |
| 14 | 0.574 | -1.965 | 0.71 | -2.997 |
| 15 | -2.462 | 1.235 | -1.503 | -1.371 |
| 16 | -2.997 | -0.756 | -2.922 | 1.232 |
| 17 | -3.266 | 1.31 | -3.635 | -1.468 |
| 18 | -0.389 | 0.995 | -2.149 | -0.691 |
| 19 | -0.35 | -0.239 | -1.078 | 0.774 |
| 20 | 0.589 | -0.389 | -0.395 | -0.167 |
| 21 | -0.449 | -0.167 | 0.659 | -0.539 |
| 22 | -0.191 | -0.131 | 0.479 | -0.384 |
| 23 | -0.653 | -0.1 | -0.573 | 0.699 |
| P-value | Threshold |
|---|---|
| 0.001 | 1.75501 |
| 0.0005 | 2.98406 |
| 0.0001 | 5.59576 |