ZBTB5.H14INVIVO.0.SGI.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZBTB5.H14INVIVO.0.SGI.D
Gene (human)	ZBTB5 (GeneCards)
Gene synonyms (human)	KIAA0354
Gene (mouse)	Zbtb5
Gene synonyms (mouse)	Kiaa0354
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	12
Consensus	nRbGATCbdbbn
GC content	51.81%
Information content (bits; total / per base)	9.463 / 0.789
Data sources	HT-SELEX + Genomic HT-SELEX + SMiLe-Seq
Aligned words	8416
Previous names

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.999	0.998	0.991	0.989	0.872	0.883
GFPIVT, 1 experiments	best	0.999	0.998	0.991	0.989	0.872	0.883

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	26.636	0.79	0.81	0.723
GFPIVT, 1 experiments	best	45.013	0.925	0.918	0.825

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 1 experiments	median	0.99	0.985	0.98	0.97	0.953	0.938
Overall, 1 experiments	best	0.99	0.985	0.98	0.97	0.953	0.938

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Other with up to three adjacent zinc fingers {2.3.2} (TFClass)
TF subfamily	BTB-POZ {2.3.2.1} (TFClass)
TFClass ID	TFClass: 2.3.2.1.1
HGNC	HGNC:23836
MGI	MGI:1924601
EntrezGene (human)	GeneID:9925 (SSTAR profile)
EntrezGene (mouse)	GeneID:230119 (SSTAR profile)
UniProt ID (human)	ZBTB5_HUMAN
UniProt ID (mouse)	ZBTB5_MOUSE
UniProt AC (human)	O15062 (TFClass)
UniProt AC (mouse)	Q7TQG0 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	1
PBM	0

PCM	ZBTB5.H14INVIVO.0.SGI.D.pcm
PWM	ZBTB5.H14INVIVO.0.SGI.D.pwm
PFM	ZBTB5.H14INVIVO.0.SGI.D.pfm
Threshold to P-value map	ZBTB5.H14INVIVO.0.SGI.D.thr
Motif in other formats
JASPAR format	ZBTB5.H14INVIVO.0.SGI.D_jaspar_format.txt
MEME format	ZBTB5.H14INVIVO.0.SGI.D_meme_format.meme
Transfac format	ZBTB5.H14INVIVO.0.SGI.D_transfac_format.txt
Homer format	ZBTB5.H14INVIVO.0.SGI.D_homer_format_0.001.txt ZBTB5.H14INVIVO.0.SGI.D_homer_format_0.0005.txt ZBTB5.H14INVIVO.0.SGI.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	2559.5	1896.5	1917.5	2042.5
02	1612.0	488.0	5394.0	922.0
03	965.0	2060.0	2942.0	2449.0
04	259.0	3.0	8150.0	4.0
05	8410.0	3.0	0.0	3.0
06	2.0	53.0	17.0	8344.0
07	0.0	8403.0	13.0	0.0
08	951.0	3016.0	1838.0	2611.0
09	4963.0	834.0	1592.0	1027.0
10	427.0	3361.0	2764.0	1864.0
11	904.75	1892.75	917.75	4700.75
12	1918.25	2019.25	2748.25	1730.25

PFM

	A	C	G	T
01	0.304	0.225	0.228	0.243
02	0.192	0.058	0.641	0.11
03	0.115	0.245	0.35	0.291
04	0.031	0.0	0.968	0.0
05	0.999	0.0	0.0	0.0
06	0.0	0.006	0.002	0.991
07	0.0	0.998	0.002	0.0
08	0.113	0.358	0.218	0.31
09	0.59	0.099	0.189	0.122
10	0.051	0.399	0.328	0.221
11	0.108	0.225	0.109	0.559
12	0.228	0.24	0.327	0.206

PWM

	A	C	G	T
01	0.196	-0.104	-0.093	-0.03
02	-0.266	-1.458	0.941	-0.824
03	-0.778	-0.021	0.335	0.152
04	-2.087	-5.993	1.353	-5.819
05	1.385	-5.993	-6.838	-5.993
06	-6.204	-3.641	-4.695	1.377
07	-6.838	1.384	-4.927	-6.838
08	-0.793	0.36	-0.135	0.216
09	0.858	-0.924	-0.279	-0.716
10	-1.591	0.468	0.273	-0.121
11	-0.843	-0.106	-0.828	0.803
12	-0.092	-0.041	0.267	-0.195

Standard thresholds

P-value	Threshold
0.001	5.28951
0.0005	6.07226
0.0001	7.41363