ZBT41.H14INVIVO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZBT41.H14INVIVO.0.PSG.A
Gene (human)	ZBTB41 (GeneCards)
Gene synonyms (human)	FRBZ1
Gene (mouse)	Zbtb41
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	20
Consensus	nGvbGRGCKYbKdvRGSvnS
GC content	62.67%
Information content (bits; total / per base)	11.917 / 0.596
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	992
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.759	0.873	0.617	0.807	0.554	0.609	28.926	48.108

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.643	0.589	0.603	0.569	0.569	0.55
GFPIVT, 1 experiments	best	0.643	0.589	0.603	0.569	0.569	0.55

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	6.098	0.484	0.599	0.397
GFPIVT, 1 experiments	best	8.538	0.487	0.605	0.404

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.33
HGNC	HGNC:24819
MGI	MGI:2444487
EntrezGene (human)	GeneID:360023 (SSTAR profile)
EntrezGene (mouse)	GeneID:226470 (SSTAR profile)
UniProt ID (human)	ZBT41_HUMAN
UniProt ID (mouse)	ZBT41_MOUSE
UniProt AC (human)	Q5SVQ8 (TFClass)
UniProt AC (mouse)	Q811F1 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZBT41.H14INVIVO.0.PSG.A.pcm
PWM	ZBT41.H14INVIVO.0.PSG.A.pwm
PFM	ZBT41.H14INVIVO.0.PSG.A.pfm
Threshold to P-value map	ZBT41.H14INVIVO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZBT41.H14INVIVO.0.PSG.A_jaspar_format.txt
MEME format	ZBT41.H14INVIVO.0.PSG.A_meme_format.meme
Transfac format	ZBT41.H14INVIVO.0.PSG.A_transfac_format.txt
Homer format	ZBT41.H14INVIVO.0.PSG.A_homer_format_0.001.txt ZBT41.H14INVIVO.0.PSG.A_homer_format_0.0005.txt ZBT41.H14INVIVO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	201.0	148.0	304.0	339.0
02	24.0	75.0	827.0	66.0
03	135.0	412.0	328.0	117.0
04	80.0	126.0	326.0	460.0
05	64.0	96.0	814.0	18.0
06	620.0	98.0	224.0	50.0
07	63.0	32.0	882.0	15.0
08	11.0	911.0	35.0	35.0
09	49.0	77.0	121.0	745.0
10	21.0	506.0	116.0	349.0
11	103.0	257.0	133.0	499.0
12	63.0	121.0	225.0	583.0
13	429.0	107.0	338.0	118.0
14	502.0	256.0	168.0	66.0
15	281.0	48.0	552.0	111.0
16	20.0	72.0	873.0	27.0
17	87.0	620.0	191.0	94.0
18	134.0	640.0	134.0	84.0
19	372.0	224.0	222.0	174.0
20	92.0	598.0	196.0	106.0

PFM

	A	C	G	T
01	0.203	0.149	0.306	0.342
02	0.024	0.076	0.834	0.067
03	0.136	0.415	0.331	0.118
04	0.081	0.127	0.329	0.464
05	0.065	0.097	0.821	0.018
06	0.625	0.099	0.226	0.05
07	0.064	0.032	0.889	0.015
08	0.011	0.918	0.035	0.035
09	0.049	0.078	0.122	0.751
10	0.021	0.51	0.117	0.352
11	0.104	0.259	0.134	0.503
12	0.064	0.122	0.227	0.588
13	0.432	0.108	0.341	0.119
14	0.506	0.258	0.169	0.067
15	0.283	0.048	0.556	0.112
16	0.02	0.073	0.88	0.027
17	0.088	0.625	0.193	0.095
18	0.135	0.645	0.135	0.085
19	0.375	0.226	0.224	0.175
20	0.093	0.603	0.198	0.107

PWM

	A	C	G	T
01	-0.209	-0.512	0.202	0.311
02	-2.273	-1.18	1.2	-1.305
03	-0.602	0.505	0.278	-0.744
04	-1.117	-0.67	0.272	0.615
05	-1.335	-0.938	1.184	-2.538
06	0.912	-0.918	-0.101	-1.574
07	-1.35	-2.002	1.264	-2.703
08	-2.977	1.296	-1.917	-1.917
09	-1.594	-1.154	-0.71	1.095
10	-2.397	0.71	-0.752	0.34
11	-0.869	0.035	-0.617	0.696
12	-1.35	-0.71	-0.097	0.851
13	0.545	-0.832	0.308	-0.735
14	0.702	0.032	-0.386	-1.305
15	0.124	-1.614	0.796	-0.795
16	-2.442	-1.22	1.254	-2.163
17	-1.035	0.912	-0.259	-0.959
18	-0.61	0.944	-0.61	-1.069
19	0.403	-0.101	-0.11	-0.351
20	-0.98	0.876	-0.233	-0.841

Standard thresholds

P-value	Threshold
0.001	4.28461
0.0005	5.16501
0.0001	7.02416