Z705E.H14RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	Z705E.H14RSNP.0.P.D
Gene (human)	ZNF705EP (GeneCards)
Gene synonyms (human)	ZNF705E
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	21
Consensus	GGGAGAGGGAGAGGGAGAGGG
GC content	70.3%
Information content (bits; total / per base)	35.365 / 1.684
Data sources	ChIP-Seq
Aligned words	500
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.983	0.984	0.953	0.953	0.954	0.969	180.024	197.638

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF705 {2.3.3.7} (TFClass)
TFClass ID	TFClass: 2.3.3.7.4
HGNC	HGNC:33203
MGI
EntrezGene (human)	GeneID:100131539 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	Z705E_HUMAN
UniProt ID (mouse)
UniProt AC (human)	A8MWA4 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	Z705E.H14RSNP.0.P.D.pcm
PWM	Z705E.H14RSNP.0.P.D.pwm
PFM	Z705E.H14RSNP.0.P.D.pfm
Threshold to P-value map	Z705E.H14RSNP.0.P.D.thr
Motif in other formats
JASPAR format	Z705E.H14RSNP.0.P.D_jaspar_format.txt
MEME format	Z705E.H14RSNP.0.P.D_meme_format.meme
Transfac format	Z705E.H14RSNP.0.P.D_transfac_format.txt
Homer format	Z705E.H14RSNP.0.P.D_homer_format_0.001.txt Z705E.H14RSNP.0.P.D_homer_format_0.0005.txt Z705E.H14RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	20.0	3.0	473.0	4.0
02	73.0	1.0	420.0	6.0
03	14.0	2.0	483.0	1.0
04	434.0	2.0	63.0	1.0
05	3.0	0.0	497.0	0.0
06	484.0	3.0	11.0	2.0
07	10.0	5.0	476.0	9.0
08	14.0	3.0	481.0	2.0
09	3.0	8.0	486.0	3.0
10	484.0	0.0	12.0	4.0
11	8.0	1.0	488.0	3.0
12	469.0	0.0	31.0	0.0
13	6.0	0.0	494.0	0.0
14	47.0	2.0	449.0	2.0
15	9.0	4.0	485.0	2.0
16	454.0	4.0	40.0	2.0
17	3.0	5.0	488.0	4.0
18	489.0	1.0	8.0	2.0
19	3.0	19.0	475.0	3.0
20	19.0	12.0	465.0	4.0
21	16.0	2.0	480.0	2.0

PFM

	A	C	G	T
01	0.04	0.006	0.946	0.008
02	0.146	0.002	0.84	0.012
03	0.028	0.004	0.966	0.002
04	0.868	0.004	0.126	0.002
05	0.006	0.0	0.994	0.0
06	0.968	0.006	0.022	0.004
07	0.02	0.01	0.952	0.018
08	0.028	0.006	0.962	0.004
09	0.006	0.016	0.972	0.006
10	0.968	0.0	0.024	0.008
11	0.016	0.002	0.976	0.006
12	0.938	0.0	0.062	0.0
13	0.012	0.0	0.988	0.0
14	0.094	0.004	0.898	0.004
15	0.018	0.008	0.97	0.004
16	0.908	0.008	0.08	0.004
17	0.006	0.01	0.976	0.008
18	0.978	0.002	0.016	0.004
19	0.006	0.038	0.95	0.006
20	0.038	0.024	0.93	0.008
21	0.032	0.004	0.96	0.004

PWM

	A	C	G	T
01	-1.77	-3.325	1.322	-3.126
02	-0.529	-3.903	1.203	-2.819
03	-2.096	-3.573	1.343	-3.903
04	1.236	-3.573	-0.673	-3.903
05	-3.325	-4.4	1.371	-4.4
06	1.345	-3.325	-2.311	-3.573
07	-2.394	-2.961	1.328	-2.484
08	-2.096	-3.325	1.338	-3.573
09	-3.325	-2.584	1.349	-3.325
10	1.345	-4.4	-2.234	-3.126
11	-2.584	-3.903	1.353	-3.325
12	1.313	-4.4	-1.358	-4.4
13	-2.819	-4.4	1.365	-4.4
14	-0.958	-3.573	1.27	-3.573
15	-2.484	-3.126	1.347	-3.573
16	1.281	-3.126	-1.114	-3.573
17	-3.325	-2.961	1.353	-3.126
18	1.355	-3.903	-2.584	-3.573
19	-3.325	-1.818	1.326	-3.325
20	-1.818	-2.234	1.305	-3.126
21	-1.975	-3.573	1.336	-3.573

Standard thresholds

P-value	Threshold
0.001	-10.48984
0.0005	-8.48779
0.0001	-4.17814