Z286B.H14INVIVO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	Z286B.H14INVIVO.0.PSG.A
Gene (human)	ZNF286B (GeneCards)
Gene synonyms (human)	ZNF286C, ZNF286L
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	17
Consensus	WRGKARTGAGMYbSCYR
GC content	55.07%
Information content (bits; total / per base)	16.881 / 0.993
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	227
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	1 (1)	0.965	0.965	0.953	0.953	0.959	0.959	60.62	60.62

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	0.937	0.941	0.83	0.849	0.735	0.764
GFPIVT, 2 experiments	best	1.0	1.0	0.999	0.999	0.908	0.919

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	621.119	0.947	0.973	0.965
GFPIVT, 1 experiments	best	884.824	0.973	0.982	0.971

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF286 {2.3.3.49} (TFClass)
TFClass ID	TFClass: 2.3.3.49.2
HGNC	HGNC:33241
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	Z286B_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P0CG31 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	Z286B.H14INVIVO.0.PSG.A.pcm
PWM	Z286B.H14INVIVO.0.PSG.A.pwm
PFM	Z286B.H14INVIVO.0.PSG.A.pfm
Threshold to P-value map	Z286B.H14INVIVO.0.PSG.A.thr
Motif in other formats
JASPAR format	Z286B.H14INVIVO.0.PSG.A_jaspar_format.txt
MEME format	Z286B.H14INVIVO.0.PSG.A_meme_format.meme
Transfac format	Z286B.H14INVIVO.0.PSG.A_transfac_format.txt
Homer format	Z286B.H14INVIVO.0.PSG.A_homer_format_0.001.txt Z286B.H14INVIVO.0.PSG.A_homer_format_0.0005.txt Z286B.H14INVIVO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	147.0	18.0	20.0	42.0
02	45.0	13.0	160.0	9.0
03	17.0	13.0	186.0	11.0
04	14.0	6.0	67.0	140.0
05	221.0	1.0	5.0	0.0
06	155.0	21.0	50.0	1.0
07	6.0	10.0	22.0	189.0
08	4.0	1.0	222.0	0.0
09	224.0	0.0	3.0	0.0
10	1.0	3.0	219.0	4.0
11	29.0	147.0	24.0	27.0
12	5.0	83.0	9.0	130.0
13	15.0	104.0	27.0	81.0
14	22.0	166.0	24.0	15.0
15	7.0	194.0	7.0	19.0
16	26.0	149.0	10.0	42.0
17	78.0	11.0	130.0	8.0

PFM

	A	C	G	T
01	0.648	0.079	0.088	0.185
02	0.198	0.057	0.705	0.04
03	0.075	0.057	0.819	0.048
04	0.062	0.026	0.295	0.617
05	0.974	0.004	0.022	0.0
06	0.683	0.093	0.22	0.004
07	0.026	0.044	0.097	0.833
08	0.018	0.004	0.978	0.0
09	0.987	0.0	0.013	0.0
10	0.004	0.013	0.965	0.018
11	0.128	0.648	0.106	0.119
12	0.022	0.366	0.04	0.573
13	0.066	0.458	0.119	0.357
14	0.097	0.731	0.106	0.066
15	0.031	0.855	0.031	0.084
16	0.115	0.656	0.044	0.185
17	0.344	0.048	0.573	0.035

PWM

	A	C	G	T
01	0.937	-1.099	-1.001	-0.293
02	-0.226	-1.398	1.021	-1.725
03	-1.152	-1.398	1.171	-1.548
04	-1.331	-2.067	0.162	0.889
05	1.342	-3.205	-2.213	-3.758
06	0.99	-0.955	-0.123	-3.205
07	-2.067	-1.633	-0.911	1.187
08	-2.384	-3.205	1.346	-3.758
09	1.355	-3.758	-2.591	-3.758
10	-3.205	-2.591	1.333	-2.384
11	-0.649	0.937	-0.829	-0.717
12	-2.213	0.373	-1.725	0.816
13	-1.268	0.595	-0.717	0.349
14	-0.911	1.058	-0.829	-1.268
15	-1.939	1.213	-1.939	-1.049
16	-0.753	0.951	-1.633	-0.293
17	0.312	-1.548	0.816	-1.826

Standard thresholds

P-value	Threshold
0.001	2.74901
0.0005	3.89656
0.0001	6.31476