MotifUSF3.H14INVIVO.0.PSGIB.A
Gene (human)USF3
(GeneCards)
Gene synonyms (human)KIAA2018
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length11
ConsensusvvbCACGTGGS
GC content70.48%
Information content (bits; total / per base)12.245 / 1.113
Data sourcesChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq + PBM
Aligned words1000
Previous names

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best Centrality, median Centrality, best
Overall 2 (2) 0.921 0.934 0.883 0.905 0.798 0.825 303.958 331.42

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
overall, 3 experiments median 0.999 0.999 0.999 0.999 0.999 0.998
best 1.0 0.999 1.0 0.999 0.999 0.999
Lysate, 1 experiments median 0.999 0.999 0.999 0.999 0.999 0.998
best 0.999 0.999 0.999 0.999 0.999 0.998
IVT, 1 experiments median 0.998 0.995 0.982 0.979 0.799 0.829
best 0.998 0.995 0.982 0.979 0.799 0.829
GFPIVT, 1 experiments median 1.0 0.999 1.0 0.999 0.999 0.999
best 1.0 0.999 1.0 0.999 0.999 0.999

Genomic HT-SELEX benchmarking Centrality pseudo-auROC auROC auPR
overall, 2 experiments median 1023.493 0.988 0.988 0.952
best 1089.42 0.991 0.989 0.958
Lysate, 1 experiments median 1018.024 0.988 0.988 0.955
best 1026.824 0.991 0.989 0.958
GFPIVT, 1 experiments median 1081.332 0.99 0.987 0.951
best 1089.42 0.991 0.988 0.953

SMiLE-Seq benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 1 experiments median 0.988 0.982 0.911 0.906 0.734 0.761
best 0.988 0.982 0.911 0.906 0.734 0.761

PBM benchmarking auROC, QNZS auPR, QNZS auROC, SD auPR, SD
Overall, 4 experiments median 0.819 0.288 0.964 0.539
best 0.903 0.393 0.973 0.597
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familybHLH-ZIP {1.2.6} (TFClass)
TF subfamilyUSF {1.2.6.2} (TFClass)
TFClass IDTFClass: 1.2.6.2.3
HGNCHGNC:30494
MGI
EntrezGene (human)GeneID:205717
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)USF3_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q68DE3
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 3 overall: 1 Lysate, 1 IVT, 1 GFPIVT
Genomic HT-SELEX 2 overall: 1 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq 1
PBM 4
PCM
ACGT
01210.0206.0517.067.0
02205.0204.0510.081.0
03124.0405.0210.0261.0
0443.0938.016.03.0
05929.020.042.09.0
0617.0960.019.04.0
073.07.0974.016.0
0861.046.012.0881.0
093.03.0971.023.0
1082.023.0870.025.0
1194.0136.0664.0106.0
PFM
ACGT
010.210.2060.5170.067
020.2050.2040.510.081
030.1240.4050.210.261
040.0430.9380.0160.003
050.9290.020.0420.009
060.0170.960.0190.004
070.0030.0070.9740.016
080.0610.0460.0120.881
090.0030.0030.9710.023
100.0820.0230.870.025
110.0940.1360.6640.106
PWM
ACGT
01-0.173-0.1920.723-1.298
02-0.197-0.2020.709-1.113
03-0.6940.48-0.1730.043
04-1.7281.317-2.653-3.975
051.308-2.45-1.75-3.156
06-2.5981.34-2.497-3.783
07-3.975-3.3621.355-2.653
08-1.39-1.663-2.9091.255
09-3.975-3.9751.352-2.32
10-1.101-2.321.242-2.243
11-0.967-0.6030.973-0.849
Standard thresholds
P-value Threshold
0.001 4.033185
0.0005 5.08356
0.0001 7.158505