MotifUSF3.H14CORE.0.PSGIB.A
Gene (human)USF3
(GeneCards)
Gene synonyms (human)KIAA2018
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length12
ConsensusdRvYCACGTGGK
GC content67.25%
Information content (bits; total / per base)16.271 / 1.356
Data sourcesChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq + PBM
Aligned words9093
Previous names

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best Centrality, median Centrality, best
Overall 2 (2) 0.859 0.868 0.845 0.862 0.775 0.805 319.797 350.31

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
overall, 3 experiments median 0.999 0.999 0.999 0.999 0.999 0.999
best 1.0 0.999 1.0 0.999 1.0 0.999
Lysate, 1 experiments median 0.999 0.999 0.999 0.999 0.999 0.999
best 0.999 0.999 0.999 0.999 0.999 0.999
IVT, 1 experiments median 0.999 0.997 0.986 0.984 0.809 0.836
best 0.999 0.997 0.986 0.984 0.809 0.836
GFPIVT, 1 experiments median 1.0 0.999 1.0 0.999 1.0 0.999
best 1.0 0.999 1.0 0.999 1.0 0.999

Genomic HT-SELEX benchmarking Centrality pseudo-auROC auROC auPR
overall, 2 experiments median 1019.16 0.992 0.988 0.962
best 1093.886 0.995 0.989 0.966
Lysate, 1 experiments median 1011.859 0.992 0.989 0.964
best 1026.398 0.995 0.989 0.966
GFPIVT, 1 experiments median 1091.293 0.993 0.987 0.958
best 1093.886 0.995 0.988 0.962

SMiLE-Seq benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 1 experiments median 0.991 0.985 0.917 0.913 0.745 0.769
best 0.991 0.985 0.917 0.913 0.745 0.769

PBM benchmarking auROC, QNZS auPR, QNZS auROC, SD auPR, SD
Overall, 4 experiments median 0.809 0.341 0.966 0.621
best 0.904 0.462 0.973 0.673
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familybHLH-ZIP {1.2.6} (TFClass)
TF subfamilyUSF {1.2.6.2} (TFClass)
TFClass IDTFClass: 1.2.6.2.3
HGNCHGNC:30494
MGI
EntrezGene (human)GeneID:205717
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)USF3_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q68DE3
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 3 overall: 1 Lysate, 1 IVT, 1 GFPIVT
Genomic HT-SELEX 2 overall: 1 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq 1
PBM 4
PCM
ACGT
013120.5689.52912.52370.5
021844.5455.55756.51036.5
032607.01624.04605.0257.0
04361.05663.0341.02728.0
050.09093.00.00.0
069093.00.00.00.0
070.09093.00.00.0
080.00.09093.00.0
090.00.00.09093.0
100.00.09093.00.0
1159.00.08933.0101.0
12251.25605.255424.252812.25
PFM
ACGT
010.3430.0760.320.261
020.2030.050.6330.114
030.2870.1790.5060.028
040.040.6230.0380.3
050.01.00.00.0
061.00.00.00.0
070.01.00.00.0
080.00.01.00.0
090.00.00.01.0
100.00.01.00.0
110.0060.00.9820.011
120.0280.0670.5970.309
PWM
ACGT
010.317-1.1910.2480.042
02-0.209-1.6040.929-0.784
030.137-0.3360.705-2.172
04-1.8350.912-1.8910.182
05-6.9061.386-6.906-6.906
061.386-6.906-6.906-6.906
07-6.9061.386-6.906-6.906
08-6.906-6.9061.386-6.906
09-6.906-6.906-6.9061.386
10-6.906-6.9061.386-6.906
11-3.615-6.9061.368-3.093
12-2.194-1.3210.8690.213
Standard thresholds
P-value Threshold
0.001 -1.601895
0.0005 0.499125
0.0001 4.231265