TTF1.H14INVIVO.0.PS.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	TTF1.H14INVIVO.0.PS.A
Gene (human)	TTF1 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Ttf1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	18
Consensus	dRGKhbACCAGvdGbYbv
GC content	60.26%
Information content (bits; total / per base)	14.351 / 0.797
Data sources	ChIP-Seq + HT-SELEX
Aligned words	999
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	1 (1)	0.965	0.965	0.943	0.943	0.895	0.895	177.678	177.678

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.73	0.749	0.589	0.622	0.541	0.567
GFPIVT, 1 experiments	best	0.73	0.749	0.589	0.622	0.541	0.567

TF superclass	Helix-turn-helix domains {3} (TFClass)
TF class	Tryptophan cluster factors {3.5} (TFClass)
TF family	Myb/SANT domain {3.5.1} (TFClass)
TF subfamily	Other Myb-like {3.5.1.0} (TFClass)
TFClass ID	TFClass: 3.5.1.0.257
HGNC
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	TTF1_HUMAN
UniProt ID (mouse)	TTF1_MOUSE
UniProt AC (human)	Q15361 (TFClass)
UniProt AC (mouse)	Q62187 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	1 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	TTF1.H14INVIVO.0.PS.A.pcm
PWM	TTF1.H14INVIVO.0.PS.A.pwm
PFM	TTF1.H14INVIVO.0.PS.A.pfm
Threshold to P-value map	TTF1.H14INVIVO.0.PS.A.thr
Motif in other formats
JASPAR format	TTF1.H14INVIVO.0.PS.A_jaspar_format.txt
MEME format	TTF1.H14INVIVO.0.PS.A_meme_format.meme
Transfac format	TTF1.H14INVIVO.0.PS.A_transfac_format.txt
Homer format	TTF1.H14INVIVO.0.PS.A_homer_format_0.001.txt TTF1.H14INVIVO.0.PS.A_homer_format_0.0005.txt TTF1.H14INVIVO.0.PS.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	375.0	130.0	283.0	211.0
02	167.0	35.0	718.0	79.0
03	66.0	45.0	877.0	11.0
04	50.0	74.0	388.0	487.0
05	293.0	363.0	101.0	242.0
06	106.0	115.0	525.0	253.0
07	941.0	48.0	5.0	5.0
08	9.0	965.0	9.0	16.0
09	25.0	936.0	24.0	14.0
10	973.0	4.0	3.0	19.0
11	3.0	1.0	982.0	13.0
12	359.0	350.0	188.0	102.0
13	484.0	66.0	102.0	347.0
14	86.0	70.0	820.0	23.0
15	95.0	476.0	218.0	210.0
16	146.0	561.0	29.0	263.0
17	58.0	435.0	175.0	331.0
18	150.0	420.0	295.0	134.0

PFM

	A	C	G	T
01	0.375	0.13	0.283	0.211
02	0.167	0.035	0.719	0.079
03	0.066	0.045	0.878	0.011
04	0.05	0.074	0.388	0.487
05	0.293	0.363	0.101	0.242
06	0.106	0.115	0.526	0.253
07	0.942	0.048	0.005	0.005
08	0.009	0.966	0.009	0.016
09	0.025	0.937	0.024	0.014
10	0.974	0.004	0.003	0.019
11	0.003	0.001	0.983	0.013
12	0.359	0.35	0.188	0.102
13	0.484	0.066	0.102	0.347
14	0.086	0.07	0.821	0.023
15	0.095	0.476	0.218	0.21
16	0.146	0.562	0.029	0.263
17	0.058	0.435	0.175	0.331
18	0.15	0.42	0.295	0.134

PWM

	A	C	G	T
01	0.404	-0.647	0.124	-0.167
02	-0.399	-1.924	1.052	-1.136
03	-1.312	-1.683	1.251	-2.984
04	-1.581	-1.2	0.438	0.664
05	0.159	0.372	-0.895	-0.031
06	-0.848	-0.768	0.739	0.013
07	1.321	-1.621	-3.621	-3.621
08	-3.155	1.347	-3.155	-2.652
09	-2.242	1.316	-2.28	-2.772
10	1.355	-3.782	-3.974	-2.496
11	-3.974	-4.524	1.364	-2.838
12	0.361	0.336	-0.282	-0.886
13	0.658	-1.312	-0.886	0.327
14	-1.053	-1.254	1.184	-2.319
15	-0.955	0.642	-0.135	-0.172
16	-0.532	0.805	-2.102	0.051
17	-1.438	0.552	-0.353	0.28
18	-0.505	0.517	0.165	-0.617

Standard thresholds

P-value	Threshold
0.001	3.28121
0.0005	4.40346
0.0001	6.74271