TTF1.H14INVITRO.0.PS.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	TTF1.H14INVITRO.0.PS.A
Gene (human)	TTF1 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Ttf1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	15
Consensus	RGKhKACCAGvdGbY
GC content	61.09%
Information content (bits; total / per base)	14.03 / 0.935
Data sources	ChIP-Seq + HT-SELEX
Aligned words	500
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	1 (1)	0.96	0.96	0.934	0.934	0.884	0.884	167.678	167.678

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.758	0.762	0.633	0.644	0.575	0.588
GFPIVT, 1 experiments	best	0.758	0.762	0.633	0.644	0.575	0.588

TF superclass	Helix-turn-helix domains {3} (TFClass)
TF class	Tryptophan cluster factors {3.5} (TFClass)
TF family	Myb/SANT domain {3.5.1} (TFClass)
TF subfamily	Other Myb-like {3.5.1.0} (TFClass)
TFClass ID	TFClass: 3.5.1.0.257
HGNC
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	TTF1_HUMAN
UniProt ID (mouse)	TTF1_MOUSE
UniProt AC (human)	Q15361 (TFClass)
UniProt AC (mouse)	Q62187 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	1 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	TTF1.H14INVITRO.0.PS.A.pcm
PWM	TTF1.H14INVITRO.0.PS.A.pwm
PFM	TTF1.H14INVITRO.0.PS.A.pfm
Threshold to P-value map	TTF1.H14INVITRO.0.PS.A.thr
Motif in other formats
JASPAR format	TTF1.H14INVITRO.0.PS.A_jaspar_format.txt
MEME format	TTF1.H14INVITRO.0.PS.A_meme_format.meme
Transfac format	TTF1.H14INVITRO.0.PS.A_transfac_format.txt
Homer format	TTF1.H14INVITRO.0.PS.A_homer_format_0.001.txt TTF1.H14INVITRO.0.PS.A_homer_format_0.0005.txt TTF1.H14INVITRO.0.PS.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	82.0	22.0	358.0	38.0
02	42.0	22.0	431.0	5.0
03	28.0	30.0	191.0	251.0
04	150.0	180.0	49.0	121.0
05	37.0	52.0	286.0	125.0
06	458.0	35.0	5.0	2.0
07	3.0	486.0	3.0	8.0
08	9.0	468.0	15.0	8.0
09	494.0	0.0	1.0	5.0
10	2.0	2.0	490.0	6.0
11	179.0	175.0	88.0	58.0
12	248.0	35.0	43.0	174.0
13	34.0	35.0	423.0	8.0
14	56.0	236.0	99.0	109.0
15	60.0	302.0	20.0	118.0

PFM

	A	C	G	T
01	0.164	0.044	0.716	0.076
02	0.084	0.044	0.862	0.01
03	0.056	0.06	0.382	0.502
04	0.3	0.36	0.098	0.242
05	0.074	0.104	0.572	0.25
06	0.916	0.07	0.01	0.004
07	0.006	0.972	0.006	0.016
08	0.018	0.936	0.03	0.016
09	0.988	0.0	0.002	0.01
10	0.004	0.004	0.98	0.012
11	0.358	0.35	0.176	0.116
12	0.496	0.07	0.086	0.348
13	0.068	0.07	0.846	0.016
14	0.112	0.472	0.198	0.218
15	0.12	0.604	0.04	0.236

PWM

	A	C	G	T
01	-0.415	-1.681	1.044	-1.163
02	-1.067	-1.681	1.229	-2.961
03	-1.454	-1.389	0.42	0.691
04	0.18	0.361	-0.918	-0.032
05	-1.189	-0.86	0.821	0.0
06	1.29	-1.242	-2.961	-3.573
07	-3.325	1.349	-3.325	-2.584
08	-2.484	1.311	-2.034	-2.584
09	1.365	-4.4	-3.903	-2.961
10	-3.573	-3.573	1.357	-2.819
11	0.355	0.333	-0.346	-0.754
12	0.679	-1.242	-1.044	0.327
13	-1.27	-1.242	1.21	-2.584
14	-0.788	0.63	-0.23	-0.135
15	-0.721	0.875	-1.77	-0.057

Standard thresholds

P-value	Threshold
0.001	3.49061
0.0005	4.58386
0.0001	6.85811