| Motif | TIGD5.H14INVIVO.0.PSGI.A |
| Gene (human) | TIGD5 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Tigd5 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | TIGD5.H14INVIVO.0.PSGI.A |
| Gene (human) | TIGD5 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Tigd5 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 16 |
| Consensus | nbhbbnhTATARCGCb |
| GC content | 47.44% |
| Information content (bits; total / per base) | 12.201 / 0.763 |
| Data sources | ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq |
| Aligned words | 910 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 2 (2) | 0.794 | 0.803 | 0.677 | 0.692 | 0.631 | 0.642 | 99.766 | 100.076 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| overall, 5 experiments | median | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | |
| Lysate, 2 experiments | median | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | |
| IVT, 1 experiments | median | 1.0 | 1.0 | 1.0 | 1.0 | 0.999 | 0.999 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 0.999 | 0.999 | |
| GFPIVT, 2 experiments | median | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| overall, 5 experiments | median | 128.569 | 0.879 | 0.916 | 0.912 |
| best | 618.481 | 0.942 | 0.96 | 0.948 | |
| Lysate, 2 experiments | median | 120.039 | 0.906 | 0.913 | 0.922 |
| best | 250.284 | 0.941 | 0.954 | 0.948 | |
| IVT, 1 experiments | median | 418.602 | 0.942 | 0.96 | 0.945 |
| best | 418.602 | 0.942 | 0.96 | 0.945 | |
| GFPIVT, 2 experiments | median | 228.219 | 0.863 | 0.912 | 0.884 |
| best | 618.481 | 0.904 | 0.951 | 0.918 | |
| SMiLE-Seq benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.995 | 0.992 | 0.986 | 0.98 | 0.947 | 0.939 |
| best | 0.998 | 0.997 | 0.996 | 0.993 | 0.988 | 0.983 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Other {3.0} (TFClass) |
| TF family | CENPB {3.0.256} (TFClass) |
| TF subfamily | {3.0.256.0} (TFClass) |
| TFClass ID | TFClass: 3.0.256.0.4 |
| HGNC | |
| MGI | |
| EntrezGene (human) | |
| EntrezGene (mouse) | |
| UniProt ID (human) | TIGD5_HUMAN |
| UniProt ID (mouse) | TIGD5_MOUSE |
| UniProt AC (human) | Q53EQ6 (TFClass) |
| UniProt AC (mouse) | Q499M4 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 5 overall: 2 Lysate, 1 IVT, 2 GFPIVT |
| Genomic HT-SELEX | 5 overall: 2 Lysate, 1 IVT, 2 GFPIVT |
| SMiLE-Seq | 2 |
| PBM | 0 |
| PCM | TIGD5.H14INVIVO.0.PSGI.A.pcm |
| PWM | TIGD5.H14INVIVO.0.PSGI.A.pwm |
| PFM | TIGD5.H14INVIVO.0.PSGI.A.pfm |
| Threshold to P-value map | TIGD5.H14INVIVO.0.PSGI.A.thr |
| Motif in other formats | |
| JASPAR format | TIGD5.H14INVIVO.0.PSGI.A_jaspar_format.txt |
| MEME format | TIGD5.H14INVIVO.0.PSGI.A_meme_format.meme |
| Transfac format | TIGD5.H14INVIVO.0.PSGI.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 294.0 | 253.0 | 189.0 | 174.0 |
| 02 | 128.75 | 466.75 | 140.75 | 173.75 |
| 03 | 104.0 | 505.0 | 76.0 | 225.0 |
| 04 | 79.0 | 479.0 | 89.0 | 263.0 |
| 05 | 70.0 | 404.0 | 237.0 | 199.0 |
| 06 | 136.0 | 195.0 | 343.0 | 236.0 |
| 07 | 245.0 | 175.0 | 120.0 | 370.0 |
| 08 | 54.0 | 20.0 | 20.0 | 816.0 |
| 09 | 830.0 | 6.0 | 44.0 | 30.0 |
| 10 | 29.0 | 18.0 | 1.0 | 862.0 |
| 11 | 894.0 | 1.0 | 2.0 | 13.0 |
| 12 | 673.0 | 96.0 | 130.0 | 11.0 |
| 13 | 63.0 | 787.0 | 50.0 | 10.0 |
| 14 | 72.0 | 40.0 | 779.0 | 19.0 |
| 15 | 76.75 | 740.75 | 42.75 | 49.75 |
| 16 | 123.0 | 148.0 | 309.0 | 330.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.323 | 0.278 | 0.208 | 0.191 |
| 02 | 0.141 | 0.513 | 0.155 | 0.191 |
| 03 | 0.114 | 0.555 | 0.084 | 0.247 |
| 04 | 0.087 | 0.526 | 0.098 | 0.289 |
| 05 | 0.077 | 0.444 | 0.26 | 0.219 |
| 06 | 0.149 | 0.214 | 0.377 | 0.259 |
| 07 | 0.269 | 0.192 | 0.132 | 0.407 |
| 08 | 0.059 | 0.022 | 0.022 | 0.897 |
| 09 | 0.912 | 0.007 | 0.048 | 0.033 |
| 10 | 0.032 | 0.02 | 0.001 | 0.947 |
| 11 | 0.982 | 0.001 | 0.002 | 0.014 |
| 12 | 0.74 | 0.105 | 0.143 | 0.012 |
| 13 | 0.069 | 0.865 | 0.055 | 0.011 |
| 14 | 0.079 | 0.044 | 0.856 | 0.021 |
| 15 | 0.084 | 0.814 | 0.047 | 0.055 |
| 16 | 0.135 | 0.163 | 0.34 | 0.363 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.255 | 0.105 | -0.184 | -0.266 |
| 02 | -0.564 | 0.715 | -0.476 | -0.267 |
| 03 | -0.774 | 0.793 | -1.082 | -0.011 |
| 04 | -1.044 | 0.741 | -0.927 | 0.144 |
| 05 | -1.162 | 0.571 | 0.041 | -0.133 |
| 06 | -0.51 | -0.153 | 0.408 | 0.036 |
| 07 | 0.074 | -0.26 | -0.633 | 0.483 |
| 08 | -1.415 | -2.357 | -2.357 | 1.272 |
| 09 | 1.289 | -3.393 | -1.612 | -1.978 |
| 10 | -2.01 | -2.454 | -4.44 | 1.327 |
| 11 | 1.363 | -4.44 | -4.125 | -2.747 |
| 12 | 1.08 | -0.853 | -0.554 | -2.893 |
| 13 | -1.265 | 1.236 | -1.489 | -2.975 |
| 14 | -1.135 | -1.704 | 1.226 | -2.404 |
| 15 | -1.072 | 1.175 | -1.64 | -1.494 |
| 16 | -0.609 | -0.426 | 0.304 | 0.37 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.15386 |
| 0.0005 | 5.11471 |
| 0.0001 | 7.10786 |