| Motif | TIGD5.H14INVITRO.0.PSGI.A |
| Gene (human) | TIGD5 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Tigd5 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | TIGD5.H14INVITRO.0.PSGI.A |
| Gene (human) | TIGD5 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Tigd5 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 16 |
| Consensus | nhYYbbhTATAMCGMn |
| GC content | 48.34% |
| Information content (bits; total / per base) | 12.786 / 0.799 |
| Data sources | ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq |
| Aligned words | 9242 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 2 (2) | 0.774 | 0.781 | 0.656 | 0.671 | 0.63 | 0.635 | 87.8 | 96.745 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| overall, 5 experiments | median | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | |
| Lysate, 2 experiments | median | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | |
| IVT, 1 experiments | median | 1.0 | 1.0 | 1.0 | 1.0 | 0.999 | 0.998 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 0.999 | 0.998 | |
| GFPIVT, 2 experiments | median | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| overall, 5 experiments | median | 129.638 | 0.879 | 0.911 | 0.914 |
| best | 638.0 | 0.946 | 0.966 | 0.951 | |
| Lysate, 2 experiments | median | 120.112 | 0.901 | 0.913 | 0.923 |
| best | 251.131 | 0.936 | 0.952 | 0.946 | |
| IVT, 1 experiments | median | 413.377 | 0.946 | 0.966 | 0.951 |
| best | 413.377 | 0.946 | 0.966 | 0.951 | |
| GFPIVT, 2 experiments | median | 224.991 | 0.865 | 0.908 | 0.879 |
| best | 638.0 | 0.907 | 0.95 | 0.919 | |
| SMiLE-Seq benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.995 | 0.992 | 0.984 | 0.979 | 0.945 | 0.936 |
| best | 0.998 | 0.998 | 0.995 | 0.993 | 0.987 | 0.982 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Other {3.0} (TFClass) |
| TF family | CENPB {3.0.256} (TFClass) |
| TF subfamily | {3.0.256.0} (TFClass) |
| TFClass ID | TFClass: 3.0.256.0.4 |
| HGNC | |
| MGI | |
| EntrezGene (human) | |
| EntrezGene (mouse) | |
| UniProt ID (human) | TIGD5_HUMAN |
| UniProt ID (mouse) | TIGD5_MOUSE |
| UniProt AC (human) | Q53EQ6 (TFClass) |
| UniProt AC (mouse) | Q499M4 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 5 overall: 2 Lysate, 1 IVT, 2 GFPIVT |
| Genomic HT-SELEX | 5 overall: 2 Lysate, 1 IVT, 2 GFPIVT |
| SMiLE-Seq | 2 |
| PBM | 0 |
| PCM | TIGD5.H14INVITRO.0.PSGI.A.pcm |
| PWM | TIGD5.H14INVITRO.0.PSGI.A.pwm |
| PFM | TIGD5.H14INVITRO.0.PSGI.A.pfm |
| Threshold to P-value map | TIGD5.H14INVITRO.0.PSGI.A.thr |
| Motif in other formats | |
| JASPAR format | TIGD5.H14INVITRO.0.PSGI.A_jaspar_format.txt |
| MEME format | TIGD5.H14INVITRO.0.PSGI.A_meme_format.meme |
| Transfac format | TIGD5.H14INVITRO.0.PSGI.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2615.75 | 3073.75 | 1838.75 | 1713.75 |
| 02 | 1329.75 | 5086.75 | 1263.75 | 1561.75 |
| 03 | 1187.0 | 5423.0 | 648.0 | 1984.0 |
| 04 | 558.0 | 5251.0 | 767.0 | 2666.0 |
| 05 | 520.0 | 4915.0 | 2091.0 | 1716.0 |
| 06 | 1259.0 | 2231.0 | 3438.0 | 2314.0 |
| 07 | 1976.0 | 2337.0 | 1080.0 | 3849.0 |
| 08 | 355.0 | 209.0 | 74.0 | 8604.0 |
| 09 | 8798.0 | 15.0 | 184.0 | 245.0 |
| 10 | 226.0 | 160.0 | 13.0 | 8843.0 |
| 11 | 9156.0 | 4.0 | 1.0 | 81.0 |
| 12 | 6779.0 | 1294.0 | 1087.0 | 82.0 |
| 13 | 664.0 | 7916.0 | 564.0 | 98.0 |
| 14 | 1180.0 | 560.0 | 7375.0 | 127.0 |
| 15 | 949.25 | 7421.25 | 436.25 | 435.25 |
| 16 | 1330.0 | 2130.0 | 2594.0 | 3188.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.283 | 0.333 | 0.199 | 0.185 |
| 02 | 0.144 | 0.55 | 0.137 | 0.169 |
| 03 | 0.128 | 0.587 | 0.07 | 0.215 |
| 04 | 0.06 | 0.568 | 0.083 | 0.288 |
| 05 | 0.056 | 0.532 | 0.226 | 0.186 |
| 06 | 0.136 | 0.241 | 0.372 | 0.25 |
| 07 | 0.214 | 0.253 | 0.117 | 0.416 |
| 08 | 0.038 | 0.023 | 0.008 | 0.931 |
| 09 | 0.952 | 0.002 | 0.02 | 0.027 |
| 10 | 0.024 | 0.017 | 0.001 | 0.957 |
| 11 | 0.991 | 0.0 | 0.0 | 0.009 |
| 12 | 0.733 | 0.14 | 0.118 | 0.009 |
| 13 | 0.072 | 0.857 | 0.061 | 0.011 |
| 14 | 0.128 | 0.061 | 0.798 | 0.014 |
| 15 | 0.103 | 0.803 | 0.047 | 0.047 |
| 16 | 0.144 | 0.23 | 0.281 | 0.345 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.124 | 0.285 | -0.228 | -0.298 |
| 02 | -0.552 | 0.789 | -0.603 | -0.391 |
| 03 | -0.665 | 0.853 | -1.269 | -0.152 |
| 04 | -1.418 | 0.82 | -1.101 | 0.143 |
| 05 | -1.488 | 0.754 | -0.1 | -0.297 |
| 06 | -0.606 | -0.035 | 0.397 | 0.002 |
| 07 | -0.156 | 0.011 | -0.759 | 0.51 |
| 08 | -1.868 | -2.393 | -3.412 | 1.314 |
| 09 | 1.336 | -4.896 | -2.519 | -2.236 |
| 10 | -2.316 | -2.657 | -5.019 | 1.341 |
| 11 | 1.376 | -5.908 | -6.557 | -3.324 |
| 12 | 1.076 | -0.579 | -0.753 | -3.312 |
| 13 | -1.244 | 1.231 | -1.407 | -3.138 |
| 14 | -0.671 | -1.414 | 1.16 | -2.884 |
| 15 | -0.888 | 1.166 | -1.663 | -1.665 |
| 16 | -0.552 | -0.081 | 0.116 | 0.322 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.84976 |
| 0.0005 | 4.90046 |
| 0.0001 | 7.05081 |