| Motif | TF2LX.H14INVIVO.0.SM.D |
| Gene (human) | TGIF2LX (GeneCards) |
| Gene synonyms (human) | TGIFLX |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | TF2LX.H14INVIVO.0.SM.D |
| Gene (human) | TGIF2LX (GeneCards) |
| Gene synonyms (human) | TGIFLX |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 8 |
| Consensus | nTGACAbn |
| GC content | 46.47% |
| Information content (bits; total / per base) | 9.061 / 1.133 |
| Data sources | HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 3685 |
| Previous names | TF2LX.H12INVIVO.0.SM.D |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 6 experiments | median | 0.988 | 0.984 | 0.936 | 0.923 | 0.825 | 0.82 |
| best | 1.0 | 0.999 | 0.998 | 0.997 | 0.978 | 0.974 | |
| Methyl HT-SELEX, 2 experiments | median | 0.99 | 0.988 | 0.959 | 0.951 | 0.885 | 0.883 |
| best | 1.0 | 0.999 | 0.998 | 0.997 | 0.978 | 0.974 | |
| Non-Methyl HT-SELEX, 4 experiments | median | 0.821 | 0.8 | 0.759 | 0.752 | 0.699 | 0.694 |
| best | 0.999 | 0.999 | 0.998 | 0.997 | 0.973 | 0.968 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | TALE-type HD {3.1.4} (TFClass) |
| TF subfamily | PKNOX {3.1.4.5} (TFClass) |
| TFClass ID | TFClass: 3.1.4.5.3 |
| HGNC | HGNC:18570 |
| MGI | |
| EntrezGene (human) | GeneID:90316 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | TF2LX_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | Q8IUE1 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 4 |
| Methyl-HT-SELEX | 2 |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | TF2LX.H14INVIVO.0.SM.D.pcm |
| PWM | TF2LX.H14INVIVO.0.SM.D.pwm |
| PFM | TF2LX.H14INVIVO.0.SM.D.pfm |
| Threshold to P-value map | TF2LX.H14INVIVO.0.SM.D.thr |
| Motif in other formats | |
| JASPAR format | TF2LX.H14INVIVO.0.SM.D_jaspar_format.txt |
| MEME format | TF2LX.H14INVIVO.0.SM.D_meme_format.meme |
| Transfac format | TF2LX.H14INVIVO.0.SM.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1152.75 | 656.75 | 818.75 | 1056.75 |
| 02 | 0.0 | 0.0 | 204.0 | 3481.0 |
| 03 | 14.0 | 0.0 | 3671.0 | 0.0 |
| 04 | 3685.0 | 0.0 | 0.0 | 0.0 |
| 05 | 13.0 | 3625.0 | 47.0 | 0.0 |
| 06 | 3073.0 | 0.0 | 612.0 | 0.0 |
| 07 | 445.0 | 617.0 | 1519.0 | 1104.0 |
| 08 | 891.0 | 980.0 | 950.0 | 864.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.313 | 0.178 | 0.222 | 0.287 |
| 02 | 0.0 | 0.0 | 0.055 | 0.945 |
| 03 | 0.004 | 0.0 | 0.996 | 0.0 |
| 04 | 1.0 | 0.0 | 0.0 | 0.0 |
| 05 | 0.004 | 0.984 | 0.013 | 0.0 |
| 06 | 0.834 | 0.0 | 0.166 | 0.0 |
| 07 | 0.121 | 0.167 | 0.412 | 0.3 |
| 08 | 0.242 | 0.266 | 0.258 | 0.234 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.224 | -0.338 | -0.118 | 0.137 |
| 02 | -6.109 | -6.109 | -1.5 | 1.328 |
| 03 | -4.052 | -6.109 | 1.381 | -6.109 |
| 04 | 1.385 | -6.109 | -6.109 | -6.109 |
| 05 | -4.116 | 1.368 | -2.935 | -6.109 |
| 06 | 1.203 | -6.109 | -0.408 | -6.109 |
| 07 | -0.725 | -0.4 | 0.499 | 0.181 |
| 08 | -0.033 | 0.062 | 0.031 | -0.064 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.6913 |
| 0.0005 | 6.47209 |
| 0.0001 | 7.25689 |