TDIF1.H14INVIVO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	TDIF1.H14INVIVO.0.PSG.A
Gene (human)	DNTTIP1 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Dnttip1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	19
Consensus	vhRdRKGCRGGRvndvvnR
GC content	69.98%
Information content (bits; total / per base)	11.366 / 0.598
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	993
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.647	0.66	0.491	0.496	0.686	0.709	4.352	4.745

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
overall, 2 experiments	median	0.497	0.496	0.499	0.498	0.499	0.499
overall, 2 experiments	best	0.523	0.512	0.515	0.509	0.508	0.506
Lysate, 1 experiments	median	0.47	0.479	0.483	0.487	0.49	0.492
Lysate, 1 experiments	best	0.47	0.479	0.483	0.487	0.49	0.492
GFPIVT, 1 experiments	median	0.523	0.512	0.515	0.509	0.508	0.506
GFPIVT, 1 experiments	best	0.523	0.512	0.515	0.509	0.508	0.506

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
Lysate, 1 experiments	median	3.77	0.818	0.603	0.368
Lysate, 1 experiments	best	3.77	0.818	0.603	0.368

TF superclass	beta-Sheet binding to DNA {8} (TFClass)
TF class	A.T hook factors {8.2} (TFClass)
TF family	Unannotated {8.2.255} (TFClass)
TF subfamily	{8.2.255.0} (TFClass)
TFClass ID	TFClass: 8.2.255.0.2
HGNC
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	TDIF1_HUMAN
UniProt ID (mouse)	TDIF1_MOUSE
UniProt AC (human)	Q9H147 (TFClass)
UniProt AC (mouse)	Q99LB0 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	2 human, 0 mouse
HT-SELEX	2 overall: 1 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 1 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	TDIF1.H14INVIVO.0.PSG.A.pcm
PWM	TDIF1.H14INVIVO.0.PSG.A.pwm
PFM	TDIF1.H14INVIVO.0.PSG.A.pfm
Threshold to P-value map	TDIF1.H14INVIVO.0.PSG.A.thr
Motif in other formats
JASPAR format	TDIF1.H14INVIVO.0.PSG.A_jaspar_format.txt
MEME format	TDIF1.H14INVIVO.0.PSG.A_meme_format.meme
Transfac format	TDIF1.H14INVIVO.0.PSG.A_transfac_format.txt
Homer format	TDIF1.H14INVIVO.0.PSG.A_homer_format_0.001.txt TDIF1.H14INVIVO.0.PSG.A_homer_format_0.0005.txt TDIF1.H14INVIVO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	98.0	273.0	541.0	81.0
02	404.0	303.0	140.0	146.0
03	302.0	39.0	593.0	59.0
04	185.0	57.0	563.0	188.0
05	269.0	25.0	680.0	19.0
06	59.0	35.0	723.0	176.0
07	20.0	10.0	933.0	30.0
08	137.0	780.0	3.0	73.0
09	153.0	20.0	721.0	99.0
10	14.0	23.0	779.0	177.0
11	157.0	17.0	796.0	23.0
12	166.0	143.0	653.0	31.0
13	390.0	432.0	146.0	25.0
14	133.0	302.0	228.0	330.0
15	192.0	74.0	559.0	168.0
16	161.0	168.0	507.0	157.0
17	248.0	173.0	516.0	56.0
18	278.0	141.0	357.0	217.0
19	126.0	120.0	630.0	117.0

PFM

	A	C	G	T
01	0.099	0.275	0.545	0.082
02	0.407	0.305	0.141	0.147
03	0.304	0.039	0.597	0.059
04	0.186	0.057	0.567	0.189
05	0.271	0.025	0.685	0.019
06	0.059	0.035	0.728	0.177
07	0.02	0.01	0.94	0.03
08	0.138	0.785	0.003	0.074
09	0.154	0.02	0.726	0.1
10	0.014	0.023	0.784	0.178
11	0.158	0.017	0.802	0.023
12	0.167	0.144	0.658	0.031
13	0.393	0.435	0.147	0.025
14	0.134	0.304	0.23	0.332
15	0.193	0.075	0.563	0.169
16	0.162	0.169	0.511	0.158
17	0.25	0.174	0.52	0.056
18	0.28	0.142	0.36	0.219
19	0.127	0.121	0.634	0.118

PWM

	A	C	G	T
01	-0.919	0.094	0.775	-1.106
02	0.484	0.198	-0.567	-0.526
03	0.195	-1.815	0.867	-1.415
04	-0.292	-1.448	0.815	-0.276
05	0.08	-2.236	1.003	-2.49
06	-1.415	-1.918	1.064	-0.341
07	-2.443	-3.06	1.319	-2.064
08	-0.589	1.14	-3.968	-1.208
09	-0.48	-2.443	1.062	-0.909
10	-2.766	-2.314	1.139	-0.336
11	-0.454	-2.591	1.16	-2.314
12	-0.399	-0.547	0.963	-2.033
13	0.449	0.551	-0.526	-2.236
14	-0.618	0.195	-0.084	0.283
15	-0.255	-1.194	0.808	-0.387
16	-0.429	-0.387	0.711	-0.454
17	-0.001	-0.358	0.728	-1.466
18	0.112	-0.56	0.361	-0.134
19	-0.671	-0.72	0.927	-0.745

Standard thresholds

P-value	Threshold
0.001	4.42581
0.0005	5.29511
0.0001	7.10756