| Motif | TCF20.H14INVIVO.0.B.D |
| Gene (human) | TCF20 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Tcf20 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | TCF20.H14INVIVO.0.B.D |
| Gene (human) | TCF20 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Tcf20 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 10 |
| Consensus | nKAdTAWWTn |
| GC content | 20.97% |
| Information content (bits; total / per base) | 8.774 / 0.877 |
| Data sources | PBM |
| Aligned words | 702 |
| Previous names |
| PBM benchmarking | auROC, QNZS | auPR, QNZS | auROC, SD | auPR, SD | |
|---|---|---|---|---|---|
| Overall, 3 experiments | median | 0.757 | 0.029 | 0.92 | 0.182 |
| best | 0.757 | 0.029 | 0.955 | 0.24 | |
| TF superclass | Yet undefined DNA-binding domains {0} (TFClass) |
| TF class | Uncharacterized {0.0} (TFClass) |
| TF family | Unannotated {0.0.9} (TFClass) |
| TF subfamily | {0.0.9.0} (TFClass) |
| TFClass ID | TFClass: 0.0.9.0.256 |
| HGNC | |
| MGI | |
| EntrezGene (human) | |
| EntrezGene (mouse) | |
| UniProt ID (human) | TCF20_HUMAN |
| UniProt ID (mouse) | TCF20_MOUSE |
| UniProt AC (human) | Q9UGU0 (TFClass) |
| UniProt AC (mouse) | Q9EPQ8 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 3 |
| PCM | TCF20.H14INVIVO.0.B.D.pcm |
| PWM | TCF20.H14INVIVO.0.B.D.pwm |
| PFM | TCF20.H14INVIVO.0.B.D.pfm |
| Threshold to P-value map | TCF20.H14INVIVO.0.B.D.thr |
| Motif in other formats | |
| JASPAR format | TCF20.H14INVIVO.0.B.D_jaspar_format.txt |
| MEME format | TCF20.H14INVIVO.0.B.D_meme_format.meme |
| Transfac format | TCF20.H14INVIVO.0.B.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 145.0 | 188.0 | 200.0 | 169.0 |
| 02 | 0.0 | 116.0 | 419.0 | 167.0 |
| 03 | 702.0 | 0.0 | 0.0 | 0.0 |
| 04 | 269.0 | 92.0 | 120.0 | 221.0 |
| 05 | 0.0 | 0.0 | 0.0 | 702.0 |
| 06 | 367.0 | 0.0 | 0.0 | 335.0 |
| 07 | 334.0 | 2.0 | 0.0 | 366.0 |
| 08 | 363.0 | 22.0 | 0.0 | 317.0 |
| 09 | 82.0 | 49.0 | 0.0 | 571.0 |
| 10 | 171.0 | 131.0 | 133.0 | 267.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.207 | 0.268 | 0.285 | 0.241 |
| 02 | 0.0 | 0.165 | 0.597 | 0.238 |
| 03 | 1.0 | 0.0 | 0.0 | 0.0 |
| 04 | 0.383 | 0.131 | 0.171 | 0.315 |
| 05 | 0.0 | 0.0 | 0.0 | 1.0 |
| 06 | 0.523 | 0.0 | 0.0 | 0.477 |
| 07 | 0.476 | 0.003 | 0.0 | 0.521 |
| 08 | 0.517 | 0.031 | 0.0 | 0.452 |
| 09 | 0.117 | 0.07 | 0.0 | 0.813 |
| 10 | 0.244 | 0.187 | 0.189 | 0.38 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.189 | 0.068 | 0.13 | -0.037 |
| 02 | -4.683 | -0.409 | 0.865 | -0.049 |
| 03 | 1.379 | -4.683 | -4.683 | -4.683 |
| 04 | 0.424 | -0.637 | -0.376 | 0.229 |
| 05 | -4.683 | -4.683 | -4.683 | 1.379 |
| 06 | 0.733 | -4.683 | -4.683 | 0.642 |
| 07 | 0.639 | -3.885 | -4.683 | 0.73 |
| 08 | 0.722 | -2.014 | -4.683 | 0.587 |
| 09 | -0.75 | -1.252 | -4.683 | 1.173 |
| 10 | -0.026 | -0.289 | -0.274 | 0.416 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.623245 |
| 0.0005 | 6.221955 |
| 0.0001 | 7.12065 |