STAT2.H14RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	STAT2.H14RSNP.0.P.D
Gene (human)	STAT2 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Stat2
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	18
Consensus	vRGAAAnhGAAASYdRdv
GC content	38.44%
Information content (bits; total / per base)	15.563 / 0.865
Data sources	ChIP-Seq
Aligned words	1000
Previous names	STAT2.H12RSNP.0.P.D

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (7)	0.884	0.923	0.845	0.898	0.928	0.945	5.463	5.836	303.42	384.721
Mouse	8 (42)	0.902	0.968	0.861	0.946	0.935	0.982	5.112	6.053	295.347	506.409

TF superclass	Immunoglobulin fold {6} (TFClass)
TF class	STAT domain factors {6.2} (TFClass)
TF family	STAT {6.2.1} (TFClass)
TF subfamily	{6.2.1.0} (TFClass)
TFClass ID	TFClass: 6.2.1.0.2
HGNC	HGNC:11363
MGI	MGI:103039
EntrezGene (human)	GeneID:6773 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	STAT2_HUMAN
UniProt ID (mouse)	STAT2_MOUSE
UniProt AC (human)	P52630 (TFClass)
UniProt AC (mouse)	Q9WVL2 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 8 mouse
HT-SELEX	0
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	STAT2.H14RSNP.0.P.D.pcm
PWM	STAT2.H14RSNP.0.P.D.pwm
PFM	STAT2.H14RSNP.0.P.D.pfm
Threshold to P-value map	STAT2.H14RSNP.0.P.D.thr
Motif in other formats
JASPAR format	STAT2.H14RSNP.0.P.D_jaspar_format.txt
MEME format	STAT2.H14RSNP.0.P.D_meme_format.meme
Transfac format	STAT2.H14RSNP.0.P.D_transfac_format.txt
Homer format	STAT2.H14RSNP.0.P.D_homer_format_0.001.txt STAT2.H14RSNP.0.P.D_homer_format_0.0005.txt STAT2.H14RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	373.0	137.0	391.0	99.0
02	327.0	55.0	547.0	71.0
03	185.0	14.0	772.0	29.0
04	691.0	4.0	296.0	9.0
05	982.0	4.0	8.0	6.0
06	938.0	22.0	28.0	12.0
07	381.0	248.0	168.0	203.0
08	187.0	283.0	136.0	394.0
09	81.0	9.0	907.0	3.0
10	941.0	17.0	36.0	6.0
11	965.0	7.0	17.0	11.0
12	975.0	5.0	15.0	5.0
13	23.0	713.0	250.0	14.0
14	78.0	239.0	22.0	661.0
15	232.0	136.0	402.0	230.0
16	655.0	115.0	118.0	112.0
17	493.0	141.0	220.0	146.0
18	402.0	167.0	270.0	161.0

PFM

	A	C	G	T
01	0.373	0.137	0.391	0.099
02	0.327	0.055	0.547	0.071
03	0.185	0.014	0.772	0.029
04	0.691	0.004	0.296	0.009
05	0.982	0.004	0.008	0.006
06	0.938	0.022	0.028	0.012
07	0.381	0.248	0.168	0.203
08	0.187	0.283	0.136	0.394
09	0.081	0.009	0.907	0.003
10	0.941	0.017	0.036	0.006
11	0.965	0.007	0.017	0.011
12	0.975	0.005	0.015	0.005
13	0.023	0.713	0.25	0.014
14	0.078	0.239	0.022	0.661
15	0.232	0.136	0.402	0.23
16	0.655	0.115	0.118	0.112
17	0.493	0.141	0.22	0.146
18	0.402	0.167	0.27	0.161

PWM

	A	C	G	T
01	0.398	-0.596	0.445	-0.916
02	0.267	-1.49	0.779	-1.242
03	-0.299	-2.773	1.123	-2.103
04	1.012	-3.783	0.168	-3.156
05	1.363	-3.783	-3.253	-3.484
06	1.317	-2.362	-2.136	-2.909
07	0.419	-0.008	-0.394	-0.207
08	-0.288	0.123	-0.603	0.452
09	-1.113	-3.156	1.284	-3.975
10	1.32	-2.598	-1.898	-3.484
11	1.346	-3.362	-2.598	-2.985
12	1.356	-3.622	-2.711	-3.622
13	-2.32	1.044	0.0	-2.773
14	-1.15	-0.045	-2.362	0.968
15	-0.074	-0.603	0.472	-0.083
16	0.959	-0.769	-0.743	-0.795
17	0.676	-0.567	-0.127	-0.533
18	0.472	-0.4	0.076	-0.436

Standard thresholds

P-value	Threshold
0.001	2.66736
0.0005	3.87111
0.0001	6.40046