SP9.H14INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	SP9.H14INVIVO.0.P.B
Gene (human)	SP9 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Sp9
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	14
Consensus	WAATKAbWRbbWdb
GC content	32.73%
Information content (bits; total / per base)	10.918 / 0.78
Data sources	ChIP-Seq
Aligned words	990
Previous names	SP9.H12INVIVO.0.P.B

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Mouse	2 (14)	0.887	0.926	0.832	0.858	0.854	0.895	3.284	3.397	154.113	180.131

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 1 experiments	median	0.534	0.518	0.528	0.515	0.52	0.512
Non-Methyl HT-SELEX, 1 experiments	best	0.534	0.518	0.528	0.515	0.52	0.512

rSNP benchmarking, SNP-SELEX	auROC	auPRC	Pearson r	Kendall tau
batch 2	0.467	0.021	0.481	0.31

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Three-zinc finger Kruppel-related {2.3.1} (TFClass)
TF subfamily	Sp1-like {2.3.1.1} (TFClass)
TFClass ID	TFClass: 2.3.1.1.9
HGNC	HGNC:30690
MGI	MGI:3574660
EntrezGene (human)	GeneID:100131390 (SSTAR profile)
EntrezGene (mouse)	GeneID:381373 (SSTAR profile)
UniProt ID (human)	SP9_HUMAN
UniProt ID (mouse)	SP9_MOUSE
UniProt AC (human)	P0CG40 (TFClass)
UniProt AC (mouse)	Q64HY3 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 2 mouse
HT-SELEX	1
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	SP9.H14INVIVO.0.P.B.pcm
PWM	SP9.H14INVIVO.0.P.B.pwm
PFM	SP9.H14INVIVO.0.P.B.pfm
Threshold to P-value map	SP9.H14INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	SP9.H14INVIVO.0.P.B_jaspar_format.txt
MEME format	SP9.H14INVIVO.0.P.B_meme_format.meme
Transfac format	SP9.H14INVIVO.0.P.B_transfac_format.txt
Homer format	SP9.H14INVIVO.0.P.B_homer_format_0.001.txt SP9.H14INVIVO.0.P.B_homer_format_0.0005.txt SP9.H14INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	227.0	29.0	22.0	712.0
02	888.0	10.0	86.0	6.0
03	979.0	1.0	6.0	4.0
04	41.0	21.0	18.0	910.0
05	52.0	80.0	125.0	733.0
06	784.0	14.0	174.0	18.0
07	74.0	551.0	121.0	244.0
08	603.0	57.0	85.0	245.0
09	118.0	47.0	744.0	81.0
10	49.0	232.0	489.0	220.0
11	79.0	331.0	294.0	286.0
12	154.0	96.0	52.0	688.0
13	134.0	84.0	323.0	449.0
14	89.0	250.0	195.0	456.0

PFM

	A	C	G	T
01	0.229	0.029	0.022	0.719
02	0.897	0.01	0.087	0.006
03	0.989	0.001	0.006	0.004
04	0.041	0.021	0.018	0.919
05	0.053	0.081	0.126	0.74
06	0.792	0.014	0.176	0.018
07	0.075	0.557	0.122	0.246
08	0.609	0.058	0.086	0.247
09	0.119	0.047	0.752	0.082
10	0.049	0.234	0.494	0.222
11	0.08	0.334	0.297	0.289
12	0.156	0.097	0.053	0.695
13	0.135	0.085	0.326	0.454
14	0.09	0.253	0.197	0.461

PWM

	A	C	G	T
01	-0.086	-2.093	-2.352	1.052
02	1.273	-3.057	-1.044	-3.474
03	1.37	-4.516	-3.474	-3.774
04	-1.764	-2.395	-2.536	1.297
05	-1.534	-1.115	-0.676	1.081
06	1.148	-2.763	-0.349	-2.536
07	-1.191	0.797	-0.708	-0.014
08	0.886	-1.445	-1.056	-0.01
09	-0.733	-1.632	1.096	-1.103
10	-1.592	-0.064	0.678	-0.117
11	-1.127	0.289	0.171	0.144
12	-0.47	-0.936	-1.534	1.018
13	-0.608	-1.067	0.265	0.593
14	-1.011	0.01	-0.237	0.608

Standard thresholds

P-value	Threshold
0.001	4.53336
0.0005	5.41266
0.0001	7.214115