| Motif | SP4.H14INVITRO.1.S.B |
| Gene (human) | SP4 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Sp4 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | B |
| Motif | SP4.H14INVITRO.1.S.B |
| Gene (human) | SP4 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Sp4 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | B |
| Motif length | 11 |
| Consensus | nddSGCGTGdn |
| GC content | 65.97% |
| Information content (bits; total / per base) | 9.678 / 0.88 |
| Data sources | HT-SELEX |
| Aligned words | 1417 |
| Previous names | SP4.H12INVITRO.1.S.B |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 2 (12) | 0.705 | 0.772 | 0.547 | 0.64 | 0.708 | 0.773 | 1.923 | 2.335 | 10.653 | 39.056 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 2 experiments | median | 0.599 | 0.579 | 0.558 | 0.548 | 0.536 | 0.532 |
| best | 0.607 | 0.589 | 0.563 | 0.554 | 0.537 | 0.535 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | Three-zinc finger Kruppel-related {2.3.1} (TFClass) |
| TF subfamily | Sp1-like {2.3.1.1} (TFClass) |
| TFClass ID | TFClass: 2.3.1.1.4 |
| HGNC | HGNC:11209 |
| MGI | MGI:107595 |
| EntrezGene (human) | GeneID:6671 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | SP4_HUMAN |
| UniProt ID (mouse) | SP4_MOUSE |
| UniProt AC (human) | Q02446 (TFClass) |
| UniProt AC (mouse) | Q62445 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 2 |
| Methyl-HT-SELEX | 0 |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | SP4.H14INVITRO.1.S.B.pcm |
| PWM | SP4.H14INVITRO.1.S.B.pwm |
| PFM | SP4.H14INVITRO.1.S.B.pfm |
| Threshold to P-value map | SP4.H14INVITRO.1.S.B.thr |
| Motif in other formats | |
| JASPAR format | SP4.H14INVITRO.1.S.B_jaspar_format.txt |
| MEME format | SP4.H14INVITRO.1.S.B_meme_format.meme |
| Transfac format | SP4.H14INVITRO.1.S.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 339.75 | 253.75 | 498.75 | 324.75 |
| 02 | 307.75 | 158.75 | 354.75 | 595.75 |
| 03 | 302.0 | 80.0 | 796.0 | 239.0 |
| 04 | 91.0 | 468.0 | 854.0 | 4.0 |
| 05 | 18.0 | 0.0 | 1399.0 | 0.0 |
| 06 | 20.0 | 1293.0 | 0.0 | 104.0 |
| 07 | 7.0 | 0.0 | 1410.0 | 0.0 |
| 08 | 10.0 | 0.0 | 131.0 | 1276.0 |
| 09 | 70.0 | 13.0 | 1225.0 | 109.0 |
| 10 | 492.0 | 96.0 | 549.0 | 280.0 |
| 11 | 354.25 | 303.25 | 399.25 | 360.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.24 | 0.179 | 0.352 | 0.229 |
| 02 | 0.217 | 0.112 | 0.25 | 0.42 |
| 03 | 0.213 | 0.056 | 0.562 | 0.169 |
| 04 | 0.064 | 0.33 | 0.603 | 0.003 |
| 05 | 0.013 | 0.0 | 0.987 | 0.0 |
| 06 | 0.014 | 0.912 | 0.0 | 0.073 |
| 07 | 0.005 | 0.0 | 0.995 | 0.0 |
| 08 | 0.007 | 0.0 | 0.092 | 0.9 |
| 09 | 0.049 | 0.009 | 0.865 | 0.077 |
| 10 | 0.347 | 0.068 | 0.387 | 0.198 |
| 11 | 0.25 | 0.214 | 0.282 | 0.254 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.042 | -0.332 | 0.341 | -0.086 |
| 02 | -0.14 | -0.796 | 0.001 | 0.518 |
| 03 | -0.159 | -1.471 | 0.807 | -0.391 |
| 04 | -1.345 | 0.277 | 0.877 | -4.115 |
| 05 | -2.889 | -5.28 | 1.37 | -5.28 |
| 06 | -2.793 | 1.291 | -5.28 | -1.213 |
| 07 | -3.699 | -5.28 | 1.378 | -5.28 |
| 08 | -3.406 | -5.28 | -0.986 | 1.278 |
| 09 | -1.601 | -3.18 | 1.237 | -1.167 |
| 10 | 0.327 | -1.292 | 0.436 | -0.234 |
| 11 | 0.0 | -0.155 | 0.119 | 0.017 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.95227 |
| 0.0005 | 5.863485 |
| 0.0001 | 7.56005 |