| Motif | SOX18.H14INVITRO.0.SM.B |
| Gene (human) | SOX18 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Sox18 |
| Gene synonyms (mouse) | Sox-18 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | SOX18.H14INVITRO.0.SM.B |
| Gene (human) | SOX18 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Sox18 |
| Gene synonyms (mouse) | Sox-18 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 9 |
| Consensus | nGCATTGTb |
| GC content | 44.68% |
| Information content (bits; total / per base) | 13.13 / 1.459 |
| Data sources | HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 4038 |
| Previous names | SOX18.H12INVITRO.0.SM.B |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.774 | 0.737 | 0.72 | 0.689 | 0.664 | 0.643 |
| best | 0.936 | 0.898 | 0.857 | 0.821 | 0.772 | 0.744 | |
| Methyl HT-SELEX, 1 experiments | median | 0.936 | 0.898 | 0.857 | 0.821 | 0.772 | 0.744 |
| best | 0.936 | 0.898 | 0.857 | 0.821 | 0.772 | 0.744 | |
| Non-Methyl HT-SELEX, 1 experiments | median | 0.613 | 0.577 | 0.582 | 0.556 | 0.555 | 0.541 |
| best | 0.613 | 0.577 | 0.582 | 0.556 | 0.555 | 0.541 | |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 2 | 0.554 | 0.168 | 0.521 | 0.349 |
| TF superclass | Other all-alpha-helical DNA-binding domains {4} (TFClass) |
| TF class | High-mobility group (HMG) domain factors {4.1} (TFClass) |
| TF family | SOX-related {4.1.1} (TFClass) |
| TF subfamily | Group F {4.1.1.6} (TFClass) |
| TFClass ID | TFClass: 4.1.1.6.3 |
| HGNC | HGNC:11194 |
| MGI | MGI:103559 |
| EntrezGene (human) | GeneID:54345 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:20672 (SSTAR profile) |
| UniProt ID (human) | SOX18_HUMAN |
| UniProt ID (mouse) | SOX18_MOUSE |
| UniProt AC (human) | P35713 (TFClass) |
| UniProt AC (mouse) | P43680 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 1 |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | SOX18.H14INVITRO.0.SM.B.pcm |
| PWM | SOX18.H14INVITRO.0.SM.B.pwm |
| PFM | SOX18.H14INVITRO.0.SM.B.pfm |
| Threshold to P-value map | SOX18.H14INVITRO.0.SM.B.thr |
| Motif in other formats | |
| JASPAR format | SOX18.H14INVITRO.0.SM.B_jaspar_format.txt |
| MEME format | SOX18.H14INVITRO.0.SM.B_meme_format.meme |
| Transfac format | SOX18.H14INVITRO.0.SM.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 763.0 | 1008.0 | 1147.0 | 1120.0 |
| 02 | 0.0 | 1669.0 | 2369.0 | 0.0 |
| 03 | 0.0 | 4038.0 | 0.0 | 0.0 |
| 04 | 4038.0 | 0.0 | 0.0 | 0.0 |
| 05 | 0.0 | 0.0 | 0.0 | 4038.0 |
| 06 | 0.0 | 0.0 | 0.0 | 4038.0 |
| 07 | 0.0 | 0.0 | 4038.0 | 0.0 |
| 08 | 0.0 | 0.0 | 0.0 | 4038.0 |
| 09 | 542.5 | 1087.5 | 880.5 | 1527.5 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.189 | 0.25 | 0.284 | 0.277 |
| 02 | 0.0 | 0.413 | 0.587 | 0.0 |
| 03 | 0.0 | 1.0 | 0.0 | 0.0 |
| 04 | 1.0 | 0.0 | 0.0 | 0.0 |
| 05 | 0.0 | 0.0 | 0.0 | 1.0 |
| 06 | 0.0 | 0.0 | 0.0 | 1.0 |
| 07 | 0.0 | 0.0 | 1.0 | 0.0 |
| 08 | 0.0 | 0.0 | 0.0 | 1.0 |
| 09 | 0.134 | 0.269 | 0.218 | 0.378 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.279 | -0.001 | 0.127 | 0.104 |
| 02 | -6.189 | 0.502 | 0.852 | -6.189 |
| 03 | -6.189 | 1.385 | -6.189 | -6.189 |
| 04 | 1.385 | -6.189 | -6.189 | -6.189 |
| 05 | -6.189 | -6.189 | -6.189 | 1.385 |
| 06 | -6.189 | -6.189 | -6.189 | 1.385 |
| 07 | -6.189 | -6.189 | 1.385 | -6.189 |
| 08 | -6.189 | -6.189 | -6.189 | 1.385 |
| 09 | -0.619 | 0.074 | -0.136 | 0.413 |
| P-value | Threshold |
|---|---|
| 0.001 | 1.505545 |
| 0.0005 | 1.77284 |
| 0.0001 | 8.3682 |