RHXF1.H14CORE.0.SM.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	RHXF1.H14CORE.0.SM.B
Gene (human)	RHOXF1 (GeneCards)
Gene synonyms (human)	OTEX, PEPP1
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	13
Consensus	nvnGGATYAdvnn
GC content	48.43%
Information content (bits; total / per base)	9.594 / 0.738
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	9337
Previous names	RHXF1.H12CORE.0.SM.B

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 6 experiments	median	0.89	0.847	0.841	0.802	0.779	0.751
Overall, 6 experiments	best	0.975	0.957	0.957	0.932	0.92	0.892
Methyl HT-SELEX, 1 experiments	median	0.973	0.954	0.957	0.932	0.92	0.892
Methyl HT-SELEX, 1 experiments	best	0.973	0.954	0.957	0.932	0.92	0.892
Non-Methyl HT-SELEX, 5 experiments	median	0.818	0.758	0.74	0.694	0.66	0.637
Non-Methyl HT-SELEX, 5 experiments	best	0.975	0.957	0.954	0.93	0.901	0.876

TF superclass	Helix-turn-helix domains {3} (TFClass)
TF class	Homeo domain factors {3.1} (TFClass)
TF family	Paired-related HD {3.1.3} (TFClass)
TF subfamily	RHOX {3.1.3.23} (TFClass)
TFClass ID	TFClass: 3.1.3.23.1
HGNC	HGNC:29993
MGI
EntrezGene (human)	GeneID:158800 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	RHXF1_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8NHV9 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	5
Methyl-HT-SELEX	1
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	RHXF1.H14CORE.0.SM.B.pcm
PWM	RHXF1.H14CORE.0.SM.B.pwm
PFM	RHXF1.H14CORE.0.SM.B.pfm
Threshold to P-value map	RHXF1.H14CORE.0.SM.B.thr
Motif in other formats
JASPAR format	RHXF1.H14CORE.0.SM.B_jaspar_format.txt
MEME format	RHXF1.H14CORE.0.SM.B_meme_format.meme
Transfac format	RHXF1.H14CORE.0.SM.B_transfac_format.txt
Homer format	RHXF1.H14CORE.0.SM.B_homer_format_0.001.txt RHXF1.H14CORE.0.SM.B_homer_format_0.0005.txt RHXF1.H14CORE.0.SM.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	2833.25	2930.25	1642.25	1931.25
02	3425.75	1965.75	2672.75	1272.75
03	1644.0	1785.0	3164.0	2744.0
04	97.0	5.0	9186.0	49.0
05	0.0	0.0	9334.0	3.0
06	7110.0	2227.0	0.0	0.0
07	0.0	0.0	0.0	9337.0
08	761.0	3227.0	1.0	5348.0
09	8008.0	318.0	62.0	949.0
10	3580.0	1275.0	1936.0	2546.0
11	1662.0	4424.0	2174.0	1077.0
12	1537.75	3603.75	2205.75	1989.75
13	2135.25	2310.25	2340.25	2551.25

PFM

	A	C	G	T
01	0.303	0.314	0.176	0.207
02	0.367	0.211	0.286	0.136
03	0.176	0.191	0.339	0.294
04	0.01	0.001	0.984	0.005
05	0.0	0.0	1.0	0.0
06	0.761	0.239	0.0	0.0
07	0.0	0.0	0.0	1.0
08	0.082	0.346	0.0	0.573
09	0.858	0.034	0.007	0.102
10	0.383	0.137	0.207	0.273
11	0.178	0.474	0.233	0.115
12	0.165	0.386	0.236	0.213
13	0.229	0.247	0.251	0.273

PWM

	A	C	G	T
01	0.194	0.227	-0.351	-0.189
02	0.383	-0.172	0.135	-0.606
03	-0.35	-0.268	0.304	0.162
04	-3.158	-5.771	1.369	-3.819
05	-6.93	-6.93	1.385	-6.091
06	1.113	-0.047	-6.93	-6.93
07	-6.93	-6.93	-6.93	1.386
08	-1.119	0.324	-6.567	0.828
09	1.232	-1.987	-3.593	-0.899
10	0.427	-0.604	-0.187	0.087
11	-0.339	0.639	-0.071	-0.772
12	-0.417	0.434	-0.057	-0.16
13	-0.089	-0.01	0.003	0.089

Standard thresholds

P-value	Threshold
0.001	5.24666
0.0005	6.17281
0.0001	7.49972